SMTL ID : 3lum.3 (6 other biounits)

Structure of ulilysin mutant M290L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.8, F.64, A.66, T.67, K.68, R.109, Y.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.67, A:K.68, A:R.109 Water bridges: A:T.67 GOL.2: 4 residues within 4Å: Chain A: P.70, T.79, E.102, W.105 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.102 Water bridges: A:D.69, A:D.69, A:N.71, A:W.105 GOL.3: 8 residues within 4Å: Chain A: A.107, P.134, G.135, G.136, A.138, D.141, P.256, R.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.135, A:G.135, A:P.256 GOL.4: 1 residues within 4Å: Chain A: R.80 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.80, A:R.80 GOL.5: 1 residues within 4Å: Chain A: Q.243 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.243, A:Q.243, A:Q.243

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: H.168, H.172, H.178, Y.232 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.172, A:H.178, H2O.14

2 x CA: CALCIUM ION(Non-covalent)

CA.7: 5 residues within 4Å: Chain A: W.180, E.183, P.189, Q.202, A.203 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:W.180, A:E.183, A:P.189, A:Q.202, A:A.203 CA.8: 3 residues within 4Å: Chain A: D.194, V.196, T.199 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.194, A:V.196, A:T.199, H2O.2, H2O.4

1 x ARG: ARGININE(Non-covalent)

ARG.9: 12 residues within 4Å: Chain A: I.127, L.128, G.129, F.160, R.164, T.165, E.169, Y.232, V.233, D.234, D.235 Ligands: VAL.10 8 PLIP interactions: 8 interactions with chain A, Hydrogen bonds: A:L.128, A:G.129, A:T.165, A:E.169, A:V.233 Water bridges: A:R.164, A:Y.232 Salt bridges: A:D.235

1 x VAL: VALINE(Non-covalent)

VAL.10: 5 residues within 4Å: Chain A: Q.125, I.127, F.207, Y.232 Ligands: ARG.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:I.127, A:Y.232 Hydrogen bonds: A:Y.232 Water bridges: R.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tallant, C. et al., On the relevance of the Met-turn methionine in metzincins. J.Biol.Chem. (2010)

Release Date

2010-03-02

Peptides

Ulilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Ulilysin

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