SMTL ID : 3lw6.1

Crystal Structure of Drosophila beta1,4-galactosyltransferase-7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: P.58, F.59, R.60, R.62, F.97, D.121, V.122, D.123, Y.153, W.183, H.217, H.219, R.226 Ligands: MPD.2, MN.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:P.58, A:R.60, A:R.60, A:R.62, A:R.62, A:D.121, A:D.121, A:V.122, A:D.123, A:Y.153 Water bridges: A:H.219, A:H.219 Salt bridges: A:H.217, A:H.219, A:H.219, A:R.226, A:R.226 pi-Stacking: A:F.97

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 8 residues within 4Å: Chain A: R.99, Y.153, F.158, W.183, G.184, E.186, D.187 Ligands: UDP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.153, A:F.158 Hydrogen bonds: A:E.186 Water bridges: A:D.121, A:D.121, A:G.161

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: D.123, H.217, H.219 Ligands: UDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.123, A:H.217, A:H.219, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramakrishnan, B. et al., Crystal structure of the catalytic domain of Drosophila beta1,4-Galactosyltransferase-7. J.Biol.Chem. (2010)

Release Date

2010-03-16

Peptides

Beta-4-galactosyltransferase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-4-galactosyltransferase 7

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