SMTL ID : 3lwu.1

Crystal structure of Putative succinylglutamate desuccinylase/aspartoacylase (YP_749235.1) from Shewanella frigidimarinA NCIMB 400 at 2.10 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 15 residues within 4Å: Chain A: H.63, E.66, R.111, H.192, T.193, G.194, P.195, H.200, Y.202, E.262, Q.266, Y.310, L.365, K.380 Ligands: ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.111, A:R.111, A:G.194, A:Y.202, A:E.262, A:K.380, A:K.380 Water bridges: A:R.122, A:Q.266 UNL.4: 15 residues within 4Å: Chain B: H.63, E.66, R.111, H.192, T.193, G.194, P.195, H.200, Y.202, E.262, Q.266, Y.310, L.365, K.380 Ligands: ZN.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.66, B:R.111, B:R.111, B:T.193, B:E.262, B:Y.310, B:K.380, B:K.380 Water bridges: B:R.122, B:Q.266 UNL.7: 15 residues within 4Å: Chain C: H.63, E.66, R.111, H.192, T.193, G.194, P.195, H.200, Y.202, E.262, Q.266, Y.310, L.365, K.380 Ligands: ZN.8 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:R.111, C:R.111, C:E.262, C:Q.266, C:Y.310, C:K.380, C:K.380 Water bridges: C:E.66, C:R.122, C:Q.266 UNL.10: 15 residues within 4Å: Chain D: H.63, E.66, R.111, H.192, T.193, G.194, P.195, H.200, Y.202, E.262, Q.266, Y.310, L.365, K.380 Ligands: ZN.11 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:R.111, D:R.111, D:T.193, D:Y.202, D:E.262, D:Q.266, D:K.380, D:K.380 Water bridges: D:R.122, D:Q.266

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.63, E.66, H.192 Ligands: UNL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:E.66, A:E.66, A:H.192 ZN.5: 4 residues within 4Å: Chain B: H.63, E.66, H.192 Ligands: UNL.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.63, B:E.66, B:E.66, B:H.192 ZN.8: 4 residues within 4Å: Chain C: H.63, E.66, H.192 Ligands: UNL.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.63, C:E.66, C:E.66, C:H.192 ZN.11: 4 residues within 4Å: Chain D: H.63, E.66, H.192 Ligands: UNL.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.63, D:E.66, D:E.66, D:H.192

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.312, H.314 Chain B: S.169, H.172 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Salt bridges: A:K.312, A:H.314, B:H.172 Hydrogen bonds: B:S.169 Water bridges: B:S.169, B:S.169 SO4.6: 4 residues within 4Å: Chain A: S.169, H.172 Chain B: K.312, H.314 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Salt bridges: B:K.312, B:H.314, A:H.172 Hydrogen bonds: A:S.169 Water bridges: A:S.169, A:H.172 SO4.9: 4 residues within 4Å: Chain C: K.312, H.314 Chain D: S.169, H.172 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:S.169 Water bridges: D:S.169, D:H.172 Salt bridges: D:H.172, C:K.312, C:H.314 SO4.12: 4 residues within 4Å: Chain C: S.169, H.172 Chain D: K.312, H.314 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.169 Water bridges: C:S.169, C:S.169 Salt bridges: C:H.172, D:K.312, D:H.314

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative succinylglutamate desuccinylase/aspartoacylase (YP_749235.1) from Shewanella frigidimarina NCIMB 400 at 2.10 A resolution. To be published

Release Date

2010-03-23

Peptides

Succinylglutamate desuccinylase/aspartoacylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Succinylglutamate desuccinylase/aspartoacylase