SMTL ID : 3lx1.1

Crystal Structure analysis of PCNA1 from Thermococcus kodakaraensis tk0535

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: D.153, R.202, R.246 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.153, A:R.246 Salt bridges: A:R.202, A:R.246 SO4.2: 5 residues within 4Å: Chain A: R.45, V.46, L.242, L.243, A.244 No protein-ligand interaction detected (PLIP) SO4.3: 5 residues within 4Å: Chain A: F.130, T.131, A.132, K.133, E.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.130, A:K.133 SO4.4: 3 residues within 4Å: Chain B: D.153, R.202, R.246 4 PLIP interactions: 4 interactions with chain B Water bridges: B:D.153, B:R.246 Salt bridges: B:R.202, B:R.246 SO4.5: 5 residues within 4Å: Chain B: R.45, V.46, L.242, L.243, A.244 No protein-ligand interaction detected (PLIP) SO4.6: 5 residues within 4Å: Chain B: F.130, T.131, A.132, K.133, E.190 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.130, B:K.133 SO4.7: 3 residues within 4Å: Chain C: D.153, R.202, R.246 4 PLIP interactions: 4 interactions with chain C Water bridges: C:D.153, C:R.246 Salt bridges: C:R.202, C:R.246 SO4.8: 5 residues within 4Å: Chain C: R.45, V.46, L.242, L.243, A.244 No protein-ligand interaction detected (PLIP) SO4.9: 5 residues within 4Å: Chain C: F.130, T.131, A.132, K.133, E.190 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.130, C:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ladner, J.E. et al., Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-01-26

Peptides

DNA polymerase sliding clamp 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DNA polymerase sliding clamp 1

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