SMTL ID : 3lxg.1

Crystal structure of rat phosphodiesterase 10A in complex with ligand WEB-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x Z73: 2-methoxy-6,7-dimethyl-9-propylimidazo[1,5-a]pyrido[3,2-e]pyrazine(Non-covalent)

Z73.1: 9 residues within 4Å: Chain A: Y.62, L.213, S.215, V.216, I.230, F.234, M.251, Q.264, F.267 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.213, A:F.267 Hydrogen bonds: A:Q.264 pi-Stacking: A:F.234, A:F.267, A:F.267 Z73.4: 9 residues within 4Å: Chain B: Y.62, L.213, S.215, V.216, I.230, F.234, M.251, Q.264, F.267 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.213, B:F.267 Hydrogen bonds: B:Q.264 pi-Stacking: B:F.234, B:F.267, B:F.267 Z73.7: 9 residues within 4Å: Chain C: Y.62, L.213, S.215, V.216, I.230, F.234, M.251, Q.264, F.267 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.213, C:F.267 Hydrogen bonds: C:Q.264 pi-Stacking: C:F.234, C:F.267, C:F.267

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.63, H.67, H.101, D.102, D.212 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.101, A:D.102, A:D.212, H2O.5 ZN.5: 5 residues within 4Å: Chain B: H.63, H.67, H.101, D.102, D.212 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.67, B:H.101, B:D.102, B:D.212, H2O.9 ZN.8: 5 residues within 4Å: Chain C: H.63, H.67, H.101, D.102, D.212 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.67, C:H.101, C:D.102, C:D.212, H2O.14

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.102, H.105, E.130 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.4, H2O.5, H2O.5, H2O.5, H2O.5 MG.6: 3 residues within 4Å: Chain B: D.102, H.105, E.130 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.9, H2O.9, H2O.9, H2O.9, H2O.9 MG.9: 3 residues within 4Å: Chain C: D.102, H.105, E.130 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.13, H2O.14, H2O.14, H2O.14, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofgen, N. et al., Discovery of imidazo[1,5-a]pyrido[3,2-e]pyrazines as a new class of phosphodiesterase 10A inhibitiors. J.Med.Chem. (2010)

Release Date

2010-05-19

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A