SMTL ID : 3lyr.1

Human Early B-cell Factor 1 (EBF1) DNA-binding domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.150, C.154, C.157, C.163 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.150, A:C.154, A:C.157, A:C.163

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.166, P.170, S.171, D.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.171, A:D.172, A:D.172 Salt bridges: A:R.166

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.3: 1 residues within 4Å: Chain A: R.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siponen, M.I. et al., Structural Determination of Functional Domains in Early B-cell Factor (EBF) Family of Transcription Factors Reveals Similarities to Rel DNA-binding Proteins and a Novel Dimerization Motif. J.Biol.Chem. (2010)

Release Date

2010-03-16

Peptides

Transcription factor COE1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription factor COE1