SMTL ID : 3lz6.1

Guinea Pig 11beta hydroxysteroid dehydrogenase with PF-877423

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, S.67, M.68, N.94, H.95, V.96, V.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: A0D.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.190 Hydrogen bonds: A:G.16, A:S.18, A:S.18, A:K.19, A:I.21, A:R.41, A:S.42, A:S.67, A:M.68, A:N.94, A:N.94, A:V.96, A:K.162, A:I.193, A:I.193, A:T.195, A:T.197 Water bridges: A:G.22, A:S.42, A:S.42 Salt bridges: A:K.19, A:R.41 NAP.3: 28 residues within 4Å: Chain B: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, S.67, M.68, N.94, H.95, V.96, V.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: A0D.4 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:L.190 Hydrogen bonds: B:G.16, B:S.18, B:S.18, B:K.19, B:I.21, B:R.41, B:S.42, B:S.67, B:M.68, B:N.94, B:N.94, B:V.96, B:K.162, B:I.193, B:I.193, B:T.197, B:T.197 Water bridges: B:G.22 Salt bridges: B:K.19, B:R.41 NAP.5: 29 residues within 4Å: Chain C: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, S.67, M.68, N.94, H.95, V.96, V.117, V.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: A0D.6 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.190 Hydrogen bonds: C:G.16, C:S.18, C:S.18, C:K.19, C:I.21, C:R.41, C:R.41, C:S.42, C:S.67, C:M.68, C:N.94, C:N.94, C:V.96, C:Y.158, C:K.162, C:I.193, C:I.193, C:T.195, C:T.197 Water bridges: C:G.22, C:T.195, C:T.197 Salt bridges: C:K.19, C:R.41 NAP.7: 29 residues within 4Å: Chain D: G.16, A.17, S.18, K.19, G.20, I.21, A.40, R.41, S.42, G.66, S.67, M.68, N.94, H.95, V.96, V.117, V.143, S.144, S.145, Y.158, K.162, L.190, G.191, L.192, I.193, T.195, T.197, A.198 Ligands: A0D.8 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:L.190 Hydrogen bonds: D:G.16, D:S.18, D:S.18, D:K.19, D:I.21, D:R.41, D:R.41, D:S.42, D:S.67, D:M.68, D:N.94, D:N.94, D:V.96, D:Y.158, D:K.162, D:I.193, D:I.193 Water bridges: D:G.22 Salt bridges: D:K.19, D:R.41

4 x A0D: N-adamantan-2-yl-1-ethyl-D-prolinamide(Non-covalent)

A0D.2: 14 residues within 4Å: Chain A: N.99, L.101, S.145, A.147, Y.152, I.155, Y.158, L.190, G.191, L.192, A.198, A.201, Y.206 Ligands: NAP.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.101, A:Y.158, A:L.192, A:A.198, A:A.201, A:Y.206 Hydrogen bonds: A:S.145, A:Y.158 pi-Cation interactions: A:Y.152 A0D.4: 10 residues within 4Å: Chain B: S.145, Y.152, I.155, Y.158, L.190, G.191, L.192, A.198, T.202 Ligands: NAP.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.152, B:Y.158, B:L.192, B:L.192, B:A.198, B:T.202 Hydrogen bonds: B:S.145, B:Y.158 pi-Cation interactions: B:Y.152 A0D.6: 11 residues within 4Å: Chain C: S.145, Y.152, I.155, Y.158, L.190, G.191, L.192, A.198, T.202, Y.206 Ligands: NAP.5 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.158, C:L.192, C:A.198, C:T.202, C:Y.206 Hydrogen bonds: C:S.145 pi-Cation interactions: C:Y.152 A0D.8: 10 residues within 4Å: Chain D: S.145, Y.152, Y.158, L.190, G.191, L.192, T.197, A.198, Y.206 Ligands: NAP.7 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.152, D:Y.158, D:L.192, D:L.192, D:T.197, D:A.198, D:Y.206 Hydrogen bonds: D:S.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, H. et al., The development and SAR of pyrrolidine carboxamide 11beta-HSD1 inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2011-05-04

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Corticosteroid 11-beta-dehydrogenase isozyme 1