SMTL ID : 3lzg.1 (1 other biounit)

Crystal structure of a 2009 H1N1 influenza virus hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.66, E.68, D.88, N.89, C.92, P.139, R.223 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.223

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: G.48, N.278, T.279, T.280, T.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.280 NAG-NAG.3: 7 residues within 4Å: Chain C: N.66, E.68, D.88, N.89, C.92, P.139, R.223 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 7 residues within 4Å: Chain E: N.66, E.68, D.88, N.89, C.92, P.139, R.223 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.66, E:D.88, E:N.89, E:R.223 Water bridges: E:G.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R. et al., Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. Science (2010)

Release Date

2010-04-14

Peptides

Hemagglutinin, HA1 SUBUNIT: ACE
Hemagglutinin, HA2 SUBUNIT: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin, HA1 SUBUNIT

Hemagglutinin, HA2 SUBUNIT

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