SMTL ID : 3lzu.1

Crystal Structure of a Nelfinavir Resistant HIV-1 CRF01_AE Protease variant (N88S) in Complex with the Protease Inhibitor Darunavir.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: K.70 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.70 Salt bridges: A:K.70 ACT.2: 2 residues within 4Å: Chain A: K.7, R.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.7, A:R.8 Hydrogen bonds: A:R.8 Salt bridges: A:R.8 ACT.3: 1 residues within 4Å: Chain B: K.70 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.70 ACT.4: 2 residues within 4Å: Chain B: K.7, R.8 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.87, B:R.8 Hydrogen bonds: B:R.8 ACT.6: 3 residues within 4Å: Chain B: V.11, T.12, C.67 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.12, B:T.12, B:C.67

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.5: 21 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 21 PLIP interactions: 11 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:A.28, B:V.32, B:P.81, B:V.82, B:I.84, A:L.23, A:I.50 Hydrogen bonds: B:D.29, B:D.30, B:D.30, B:D.30, B:I.50, A:D.25, A:G.27, A:G.27, A:D.29, A:D.30 Salt bridges: B:D.25, A:D.25 Water bridges: A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bandaranayake, R.M. et al., The Effect of Clade-Specific Sequence Polymorphisms on HIV-1 Protease Activity and Inhibitor Resistance Pathways. J.Virol. (2010)

Release Date

2010-08-11

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HIV-1 protease