SMTL ID : 3m07.1

1.4 Angstrom Resolution Crystal Structure of Putative alpha Amylase from Salmonella typhimurium.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: D.321, E.343, W.344 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.321, A:E.343, A:W.344, H2O.1, H2O.1, H2O.1 MG.2: 1 residues within 4Å: Chain A: E.395 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.395, H2O.2, H2O.2, H2O.2, H2O.2, H2O.2 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: Q.414, L.428, I.429 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: R.133, W.134, P.314, H.316 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: S.322, D.346, R.397 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: R.307, P.314, I.315 Ligand excluded by PLIP

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.11: 9 residues within 4Å: Chain A: W.185, Y.187, H.227, W.251, D.285, A.286, E.320, H.416, D.417 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.320, A:H.416 Water bridges: A:R.283, A:E.320, A:D.417 Salt bridges: A:D.285, A:D.417

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 9 residues within 4Å: Chain A: F.355, A.356, T.357, G.358, A.432, R.436, P.556, G.557, I.576 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.432, A:R.436, A:R.436 PG4.13: 6 residues within 4Å: Chain A: H.297, V.300, Q.304, R.323, S.327, L.339 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.297, A:Q.304, A:R.323, A:R.323

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.14: 3 residues within 4Å: Chain A: Y.38, A.41, D.118 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.4 Angstrom Resolution Crystal Structure of Putative alpha Amylase from Salmonella typhimurium. TO BE PUBLISHED

Release Date

2010-03-16

Peptides

Putative alpha amylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative alpha amylase