SMTL ID : 3m09.1

F98Y TMP-resistant Dihydrofolate Reductase from Staphylococcus aureus with inhibitor RAB1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x RAR: 5-(3,4-dimethoxy-5-{(1E)-3-oxo-3-[(1S)-1-propylphthalazin-2(1H)-yl]prop-1-en-1-yl}benzyl)pyrimidine-2,4-diamine(Non-covalent)

RAR.1: 21 residues within 4Å: Chain A: L.5, V.6, A.7, Q.19, L.20, D.27, L.28, K.29, H.30, V.31, K.32, T.46, S.49, I.50, L.54, P.55, R.57, F.92, Y.98, T.111 Ligands: NAP.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.28, A:L.28, A:K.32, A:K.32, A:K.32, A:P.55, A:F.92 Hydrogen bonds: A:L.5, A:V.6, A:R.57, A:Y.98 Water bridges: A:L.20, A:D.27, A:T.111 Salt bridges: A:D.27

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 34 residues within 4Å: Chain A: L.5, V.6, A.7, H.8, I.14, G.15, F.16, N.18, Q.19, L.20, W.22, G.43, R.44, K.45, T.46, S.49, L.62, T.63, S.64, D.65, H.77, S.78, I.79, F.92, G.93, G.94, Q.95, T.96, L.97, Y.98, E.100, D.120, T.121 Ligands: RAR.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:T.46 Hydrogen bonds: A:A.7, A:I.14, A:N.18, A:Q.19, A:G.43, A:G.43, A:R.44, A:R.44, A:K.45, A:T.46, A:T.46, A:T.63, A:S.64, A:S.64, A:G.94, A:Q.95, A:T.96, A:T.96, A:T.96, A:L.97, A:E.100, A:T.121 Water bridges: A:N.18, A:R.44, A:K.45, A:I.79, A:I.79, A:T.121 Salt bridges: A:R.44, A:K.45

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: E.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.132 Water bridges: A:E.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bourne, C.R. et al., Inhibition of Antibiotic-Resistant Staphylococcus aureus by the Broad-Spectrum Dihydrofolate Reductase Inhibitor RAB1. Antimicrob.Agents Chemother. (2010)

Release Date

2010-07-14

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase