SMTL ID : 3m1a.1 (5 other biounits)

The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-10-mer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: R.211, Q.215 Chain C: A.194, F.196, Q.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.215 Water bridges: A:R.211 NA.2: 4 residues within 4Å: Chain B: R.37, D.59, V.60, L.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.37, B:R.37, B:V.60 NA.3: 3 residues within 4Å: Chain D: K.227, A.230, A.231 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.227 NA.4: 3 residues within 4Å: Chain B: Q.215 Chain E: K.191, A.194 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:K.191, E:K.191, B:Q.215

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain D: L.234 Chain E: W.269, V.272 2 PLIP interactions: 2 interactions with chain E Water bridges: E:E.268, E:V.272 ACT.6: 2 residues within 4Å: Chain I: E.268, W.269 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:W.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stein, A.J. et al., The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A. To be Published

Release Date

2010-03-23

Peptides

Putative dehydrogenase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Putative dehydrogenase

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