SMTL ID : 3m1n.2 (1 other biounit)

Crystal structure of Human Sonic Hedgehog N-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.118, D.125, E.154, H.160 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.118, A:D.125, A:D.125

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: I.26, R.141, V.144 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.141 SO4.3: 5 residues within 4Å: Chain A: R.6, G.7, F.8, G.9, R.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.7, A:G.9 Salt bridges: A:R.6, A:R.11 SO4.4: 3 residues within 4Å: Chain A: R.11, R.12, H.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:H.13 Salt bridges: A:R.11 SO4.5: 3 residues within 4Å: Chain A: K.65, R.101, R.131 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.65, A:R.101, A:R.131 SO4.6: 3 residues within 4Å: Chain A: G.38, R.39, S.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.39 Water bridges: A:R.39 Salt bridges: A:R.39 SO4.7: 2 residues within 4Å: Chain A: R.79, K.83 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.79, A:K.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pepinsky, R.B. et al., Mapping sonic hedgehog-receptor interactions by steric interference. J.Biol.Chem. (2000)

Release Date

2010-03-16

Peptides

Sonic hedgehog protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sonic hedgehog protein

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