SMTL ID : 3m1r.1 (2 other biounits)

The crystal structure of formimidoylglutamase from Bacillus subtilis subsp. subtilis str. 168

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: N.130, D.157, D.245, D.247 Ligands: CA.3, CA.4 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: H.54, G.56, T.294 Chain D: H.54 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: H.155, D.157, D.245, D.247 Ligands: CA.10, CA.11 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: H.54, T.294 Chain E: H.54 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain C: H.155, D.157, D.245, D.247 Ligands: CA.17, CA.18 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: H.54, T.294 Chain F: H.54 Ligand excluded by PLIP CL.26: 5 residues within 4Å: Chain D: N.130, D.157, N.168 Ligands: CA.27, CA.28 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain E: H.155, D.157, D.247 Ligands: CA.33, CA.34 Ligand excluded by PLIP CL.38: 5 residues within 4Å: Chain F: H.155, D.157, D.247 Ligands: CA.39, CA.40 Ligand excluded by PLIP

12 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.153, H.155, D.245, D.247 Ligands: CL.1, CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.153, A:H.155, A:D.245, A:D.247, A:D.247 CA.4: 6 residues within 4Å: Chain A: N.130, D.153, D.157, D.245 Ligands: CL.1, CA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.153, A:D.157, A:D.157, A:D.245 CA.10: 6 residues within 4Å: Chain B: D.153, H.155, D.245, D.247 Ligands: CL.8, CA.11 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.153, B:H.155, B:D.245, B:D.247, B:D.247 CA.11: 6 residues within 4Å: Chain B: N.130, D.153, D.157, D.245 Ligands: CL.8, CA.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.153, B:D.157, B:D.245 CA.17: 6 residues within 4Å: Chain C: D.153, H.155, D.245, D.247 Ligands: CL.15, CA.18 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.153, C:H.155, C:D.245, C:D.247, C:D.247 CA.18: 6 residues within 4Å: Chain C: N.130, D.153, D.157, D.245 Ligands: CL.15, CA.17 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.153, C:D.157, C:D.245 CA.27: 6 residues within 4Å: Chain D: D.153, H.155, D.245, D.247 Ligands: CL.26, CA.28 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.153, D:H.155, D:D.245, D:D.247, D:D.247 CA.28: 7 residues within 4Å: Chain D: N.130, D.153, H.155, D.157, D.245 Ligands: CL.26, CA.27 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.153, D:D.157, D:D.157, D:D.245 CA.33: 6 residues within 4Å: Chain E: D.153, H.155, D.245, D.247 Ligands: CL.32, CA.34 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.153, E:H.155, E:D.245, E:D.247, E:D.247 CA.34: 6 residues within 4Å: Chain E: N.130, D.153, D.157, D.245 Ligands: CL.32, CA.33 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.153, E:D.157, E:D.245 CA.39: 6 residues within 4Å: Chain F: D.153, H.155, D.245, D.247 Ligands: CL.38, CA.40 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.153, F:H.155, F:D.245, F:D.247, F:D.247 CA.40: 6 residues within 4Å: Chain F: N.130, D.153, D.157, D.245 Ligands: CL.38, CA.39 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.153, F:D.157, F:D.157, F:D.245

23 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: S.58, F.59, P.61, G.62, T.63 Ligand excluded by PLIP PEG.6: 10 residues within 4Å: Chain A: R.192, E.193, F.194, P.262, G.263 Chain B: D.268, L.271, H.307, H.311 Ligands: PEG.7 Ligand excluded by PLIP PEG.7: 6 residues within 4Å: Chain A: M.214, D.215, R.218, G.263 Chain B: D.268 Ligands: PEG.6 Ligand excluded by PLIP PEG.12: 7 residues within 4Å: Chain B: A.154, H.155, R.192, S.195, D.247, A.259, G.261 Ligand excluded by PLIP PEG.13: 2 residues within 4Å: Chain B: R.298, D.299 Ligand excluded by PLIP PEG.19: 4 residues within 4Å: Chain C: W.32, D.33, G.34 Chain E: Y.7 Ligand excluded by PLIP PEG.20: 5 residues within 4Å: Chain C: S.26, I.29, T.31, K.69, D.89 Ligand excluded by PLIP PEG.21: 6 residues within 4Å: Chain C: A.154, H.155, R.192, S.195, D.247, A.259 Ligand excluded by PLIP PEG.22: 8 residues within 4Å: Chain B: E.193, F.194, P.262, G.263 Chain C: D.268, L.271, H.307, H.311 Ligand excluded by PLIP PEG.23: 5 residues within 4Å: Chain C: P.119, V.122, K.144, F.239, V.283 Ligand excluded by PLIP PEG.24: 3 residues within 4Å: Chain C: R.218, D.268, E.269 Ligand excluded by PLIP PEG.25: 3 residues within 4Å: Chain C: S.58, F.59 Chain E: S.15 Ligand excluded by PLIP PEG.29: 7 residues within 4Å: Chain D: A.154, H.155, R.192, S.195, D.247, A.259, I.260 Ligand excluded by PLIP PEG.30: 9 residues within 4Å: Chain D: D.268, L.271, E.272, H.307, H.311 Chain E: E.193, F.194, P.262, G.263 Ligand excluded by PLIP PEG.35: 7 residues within 4Å: Chain E: A.154, H.155, R.192, S.195, D.247, A.259, I.260 Ligand excluded by PLIP PEG.36: 4 residues within 4Å: Chain E: P.293, D.296, F.297, R.298 Ligand excluded by PLIP PEG.37: 8 residues within 4Å: Chain E: D.268, L.271, H.307, H.311 Chain F: E.193, F.194, P.262, G.263 Ligand excluded by PLIP PEG.41: 4 residues within 4Å: Chain D: T.294, L.295 Chain F: F.297, R.298 Ligand excluded by PLIP PEG.42: 10 residues within 4Å: Chain D: R.192, E.193, F.194, P.262, G.263 Chain F: D.268, L.271, E.272, H.307, H.311 Ligand excluded by PLIP PEG.43: 8 residues within 4Å: Chain A: M.4, L.10, R.11, E.12 Chain F: T.31, W.32, D.89, L.90 Ligand excluded by PLIP PEG.44: 3 residues within 4Å: Chain F: P.46, S.58, I.95 Ligand excluded by PLIP PEG.45: 5 residues within 4Å: Chain F: T.146, D.235, K.236, T.237, D.238 Ligand excluded by PLIP PEG.46: 7 residues within 4Å: Chain F: A.154, H.155, R.192, S.195, D.247, A.259, G.261 Ligand excluded by PLIP

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.14: 9 residues within 4Å: Chain A: P.255, F.297, M.300 Chain B: P.255, F.297, M.300 Chain C: P.255, F.297, M.300 No protein-ligand interaction detected (PLIP) CAC.31: 5 residues within 4Å: Chain D: S.252 Chain E: S.252, P.255 Chain F: S.252, P.255 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.252, D:S.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of formimidoylglutamase from Bacillus subtilis subsp. subtilis str. 168. To be Published

Release Date

2010-03-16

Peptides

Formimidoylglutamase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Formimidoylglutamase

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