- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.155, N.185, I.187
- Ligands: TPP.5
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.155, A:I.187, H2O.1
CA.8: 4 residues within 4Å:- Chain B: D.155, N.185, I.187
- Ligands: TPP.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.155, B:I.187, H2O.17
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: Y.596, K.597, F.598, C.599, H.600
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.596
- Water bridges: A:L.580, A:H.600
EDO.9: 5 residues within 4Å:- Chain B: Y.596, K.597, F.598, C.599, H.600
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.596
- Water bridges: B:L.580, B:H.600
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.5: 21 residues within 4Å:- Chain A: A.34, H.70, G.117, P.118, L.119, G.154, D.155, G.156, E.160, N.185, I.187, I.189, I.245, H.259
- Chain B: D.367, I.392, E.394, F.420, Y.423, H.456
- Ligands: CA.3
20 PLIP interactions:14 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:L.119, A:I.189, B:D.367, B:I.392, B:F.420, B:Y.423
- Hydrogen bonds: A:G.117, A:L.119, A:D.155, A:D.155, A:G.156, A:E.160, A:N.185
- Water bridges: A:A.34, A:G.154, B:E.394
- Salt bridges: A:H.70, A:H.70, A:H.259
- pi-Stacking: B:F.420
TPP.10: 21 residues within 4Å:- Chain A: D.367, I.392, E.394, F.420, Y.423, H.456
- Chain B: A.34, H.70, G.117, P.118, L.119, G.154, D.155, G.156, E.160, N.185, I.187, I.189, I.245, H.259
- Ligands: CA.8
17 PLIP interactions:12 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:L.119, B:I.189, A:D.367, A:I.392, A:F.420, A:Y.423
- Hydrogen bonds: B:G.117, B:L.119, B:D.155, B:G.156, B:N.185
- Water bridges: B:A.34, B:G.154
- Salt bridges: B:H.70, B:H.70, B:H.259
- pi-Stacking: A:F.420
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nocek, B. et al., Crystal structure of transketolase in complex with thiamin diphosphate and calcium ion. To be Published
- Release Date
- 2010-04-28
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nocek, B. et al., Crystal structure of transketolase in complex with thiamin diphosphate and calcium ion. To be Published
- Release Date
- 2010-04-28
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A