SMTL ID : 3m3g.1

Crystal structure of Sm1, an elicitor of plant defence responses from Trichoderma virens.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

2 x BR: BROMIDE ION(Non-covalent)

BR.1: 2 residues within 4Å: Chain A: H.71 Ligands: ZN.3 Ligand excluded by PLIP BR.2: 2 residues within 4Å: Chain A: H.71 Ligands: ZN.3 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.71 Ligands: BR.1, BR.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.71

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: D.1, T.2, S.83, G.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.2, A:T.2 EDO.5: 5 residues within 4Å: Chain A: H.71, T.72, I.73, A.94 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.72 EDO.6: 3 residues within 4Å: Chain A: D.10, N.11, G.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.12 EDO.7: 4 residues within 4Å: Chain A: G.70, H.71, T.72 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.71 Water bridges: A:Q.67 EDO.8: 6 residues within 4Å: Chain A: N.93, G.98, Q.99, A.100, V.101, Q.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.93, A:A.100, A:V.101, A:Q.102 EDO.9: 4 residues within 4Å: Chain A: S.35, T.36, Q.39 Ligands: EDO.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.35, A:Q.39 Water bridges: A:S.35 EDO.10: 5 residues within 4Å: Chain A: Q.67, Y.68, S.69, G.70, H.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.70 Water bridges: A:S.69 EDO.11: 3 residues within 4Å: Chain A: G.38, P.41, F.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.38, A:F.43 EDO.12: 5 residues within 4Å: Chain A: A.53, G.54, W.55, N.56, S.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.55 EDO.13: 2 residues within 4Å: Chain A: H.33 Ligands: EDO.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.33 EDO.14: 5 residues within 4Å: Chain A: H.33, S.35, Q.39 Ligands: EDO.9, EDO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.35, A:Q.39 EDO.15: 4 residues within 4Å: Chain A: Y.68, L.103, V.106, S.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.68, A:S.107 Water bridges: A:R.105, A:S.107 EDO.16: 5 residues within 4Å: Chain A: D.1, A.50, A.51, W.64, F.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.51 Water bridges: A:D.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krieger, I.V. et al., Crystal structure of Sm1, an elicitor of plant defence responses from Trichoderma virens. To be Published

Release Date

2011-02-09

Peptides

Epl1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epl1 protein