SMTL ID : 3m3r.1

Crystal structure of the M113F alpha-hemolysin mutant complexed with beta-cyclodextrin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-heptamer

Ligands

2 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 19 residues within 4Å: Chain A: F.113 Chain B: F.113 Chain C: F.113, T.115 Chain D: F.113, T.145 Chain E: F.113, T.115, T.145 Chain F: F.113, T.145 Chain G: F.113 Ligands: GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC-GLC.2 No protein-ligand interaction detected (PLIP) GLC-GLC-GLC-GLC-GLC-GLC-GLC.2: 13 residues within 4Å: Chain B: T.117 Chain C: T.117, S.141 Chain D: T.117 Chain G: T.117, S.141 Ligands: GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC-GLC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, A. et al., Molecular bases of cyclodextrin adapter interactions with engineered protein nanopores. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-05-05

Peptides

Alpha-hemolysin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Membrane

We predict this structure to be a membrane protein.
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Alpha-hemolysin