- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 7 residues within 4Å:- Chain A: H.63, C.67
- Chain I: P.53, D.54, H.59, R.62
- Ligands: ZN.45
3 PLIP interactions:2 interactions with chain I, 1 interactions with chain A- Salt bridges: I:H.59, I:R.62, A:H.63
ACT.8: 5 residues within 4Å:- Chain B: C.67
- Chain G: P.53, H.59, R.62
- Ligands: ZN.12
1 PLIP interactions:1 interactions with chain G- Salt bridges: G:H.59
ACT.15: 8 residues within 4Å:- Chain C: H.63, W.66, C.67
- Chain D: P.53, D.54, H.59, R.62
- Ligands: ZN.18
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain D- Salt bridges: C:H.63, D:H.59, D:R.62
- Hydrophobic interactions: D:P.53
ACT.17: 9 residues within 4Å:- Chain D: H.63, C.67, Q.71, T.97
- Chain J: P.53, D.54, H.59, R.62
- Ligands: ZN.51
4 PLIP interactions:2 interactions with chain J, 2 interactions with chain D- Salt bridges: J:H.59, J:R.62, D:H.63
- Hydrophobic interactions: D:T.97
ACT.22: 7 residues within 4Å:- Chain A: P.53, D.54, H.59, R.62
- Chain E: H.63, C.67
- Ligands: ZN.5
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Salt bridges: A:H.59, A:R.62, E:H.63
ACT.28: 5 residues within 4Å:- Chain F: C.67
- Chain K: P.53, H.59, R.62
- Ligands: ZN.32
1 PLIP interactions:1 interactions with chain K- Salt bridges: K:H.59
ACT.35: 8 residues within 4Å:- Chain G: H.63, W.66, C.67
- Chain H: P.53, D.54, H.59, R.62
- Ligands: ZN.38
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:P.53
- Salt bridges: H:H.59, H:R.62, G:H.63
ACT.37: 9 residues within 4Å:- Chain B: P.53, D.54, H.59, R.62
- Chain H: H.63, C.67, Q.71, T.97
- Ligands: ZN.11
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain H- Salt bridges: B:H.59, B:R.62, H:H.63
- Hydrophobic interactions: H:T.97
ACT.42: 7 residues within 4Å:- Chain E: P.53, D.54, H.59, R.62
- Chain I: H.63, C.67
- Ligands: ZN.25
3 PLIP interactions:1 interactions with chain I, 2 interactions with chain E- Salt bridges: I:H.63, E:H.59, E:R.62
ACT.48: 5 residues within 4Å:- Chain C: P.53, H.59, R.62
- Chain J: C.67
- Ligands: ZN.52
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:H.59
ACT.55: 8 residues within 4Å:- Chain K: H.63, W.66, C.67
- Chain L: P.53, D.54, H.59, R.62
- Ligands: ZN.58
4 PLIP interactions:3 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:P.53
- Salt bridges: L:H.59, L:R.62, K:H.63
ACT.57: 9 residues within 4Å:- Chain F: P.53, D.54, H.59, R.62
- Chain L: H.63, C.67, Q.71, T.97
- Ligands: ZN.31
4 PLIP interactions:2 interactions with chain L, 2 interactions with chain F- Hydrophobic interactions: L:T.97
- Salt bridges: L:H.63, F:H.59, F:R.62
- 36 x ZN: ZINC ION(Non-covalent)
ZN.3: 3 residues within 4Å:- Chain A: A.1, D.39
- Chain E: H.77
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: A:A.1, A:D.39, A:D.39, E:H.77, H2O.1
ZN.4: 4 residues within 4Å:- Chain A: E.8, D.12
- Chain G: E.8, D.12
5 PLIP interactions:3 interactions with chain G, 2 interactions with chain A- Metal complexes: G:E.8, G:D.12, G:D.12, A:E.8, A:D.12
ZN.5: 3 residues within 4Å:- Chain A: H.59
- Chain E: H.63
- Ligands: ACT.22
3 PLIP interactions:1 interactions with chain E, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: E:H.63, A:H.59, H2O.1
ZN.6: 2 residues within 4Å:- Chain A: K.51, E.57
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.57, H2O.1
ZN.9: 3 residues within 4Å:- Chain B: A.1, D.39
- Chain H: H.77
5 PLIP interactions:1 interactions with chain H, 3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: H:H.77, B:A.1, B:D.39, B:D.39, H2O.2
ZN.10: 4 residues within 4Å:- Chain B: E.8, D.12
- Chain D: E.8, D.12
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Metal complexes: B:E.8, B:D.12, D:E.8, D:D.12, D:D.12
ZN.11: 4 residues within 4Å:- Chain B: D.54, H.59
- Chain H: H.63
- Ligands: ACT.37
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: B:H.59, H:H.63, H2O.2
ZN.12: 2 residues within 4Å:- Chain G: H.59
- Ligands: ACT.8
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:H.59
ZN.13: 3 residues within 4Å:- Chain B: H.77
- Chain G: A.1, D.39
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain B- Metal complexes: G:A.1, G:D.39, B:H.77
ZN.18: 4 residues within 4Å:- Chain C: H.63
- Chain D: D.54, H.59
- Ligands: ACT.15
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Metal complexes: D:D.54, D:H.59, C:H.63
ZN.19: 3 residues within 4Å:- Chain C: H.77
- Chain D: A.1, D.39
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Metal complexes: D:A.1, D:D.39, C:H.77
ZN.20: 1 residues within 4Å:- Chain D: E.4
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:E.4
ZN.23: 3 residues within 4Å:- Chain E: A.1, D.39
- Chain I: H.77
5 PLIP interactions:3 interactions with chain E, 1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: E:A.1, E:D.39, E:D.39, I:H.77, H2O.4
ZN.24: 4 residues within 4Å:- Chain E: E.8, D.12
- Chain K: E.8, D.12
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain K- Metal complexes: E:E.8, E:D.12, K:E.8, K:D.12, K:D.12
ZN.25: 3 residues within 4Å:- Chain E: H.59
- Chain I: H.63
- Ligands: ACT.42
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: I:H.63, E:H.59, H2O.4
ZN.26: 2 residues within 4Å:- Chain E: K.51, E.57
2 PLIP interactions:1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.57, H2O.4
ZN.29: 3 residues within 4Å:- Chain F: A.1, D.39
- Chain L: H.77
5 PLIP interactions:1 interactions with chain L, 3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: L:H.77, F:A.1, F:D.39, F:D.39, H2O.5
ZN.30: 4 residues within 4Å:- Chain F: E.8, D.12
- Chain H: E.8, D.12
5 PLIP interactions:3 interactions with chain H, 2 interactions with chain F- Metal complexes: H:E.8, H:D.12, H:D.12, F:E.8, F:D.12
ZN.31: 4 residues within 4Å:- Chain F: D.54, H.59
- Chain L: H.63
- Ligands: ACT.57
3 PLIP interactions:1 interactions with chain L, 1 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: L:H.63, F:H.59, H2O.5
ZN.32: 2 residues within 4Å:- Chain K: H.59
- Ligands: ACT.28
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:H.59
ZN.33: 3 residues within 4Å:- Chain F: H.77
- Chain K: A.1, D.39
3 PLIP interactions:2 interactions with chain K, 1 interactions with chain F- Metal complexes: K:A.1, K:D.39, F:H.77
ZN.38: 4 residues within 4Å:- Chain G: H.63
- Chain H: D.54, H.59
- Ligands: ACT.35
4 PLIP interactions:2 interactions with chain H, 1 interactions with chain G, 1 Ligand-Ligand interactions- Metal complexes: H:D.54, H:H.59, G:H.63, ACT.35
ZN.39: 3 residues within 4Å:- Chain G: H.77
- Chain H: A.1, D.39
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain G- Metal complexes: H:A.1, H:D.39, G:H.77
ZN.40: 1 residues within 4Å:- Chain H: E.4
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:E.4
ZN.43: 3 residues within 4Å:- Chain A: H.77
- Chain I: A.1, D.39
5 PLIP interactions:3 interactions with chain I, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: I:A.1, I:D.39, I:D.39, A:H.77, H2O.7
ZN.44: 4 residues within 4Å:- Chain C: E.8, D.12
- Chain I: E.8, D.12
5 PLIP interactions:2 interactions with chain I, 3 interactions with chain C- Metal complexes: I:E.8, I:D.12, C:E.8, C:D.12, C:D.12
ZN.45: 3 residues within 4Å:- Chain A: H.63
- Chain I: H.59
- Ligands: ACT.2
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: A:H.63, I:H.59, H2O.7
ZN.46: 2 residues within 4Å:- Chain I: K.51, E.57
2 PLIP interactions:1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:E.57, H2O.8
ZN.49: 3 residues within 4Å:- Chain D: H.77
- Chain J: A.1, D.39
5 PLIP interactions:1 interactions with chain D, 3 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: D:H.77, J:A.1, J:D.39, J:D.39, H2O.8
ZN.50: 4 residues within 4Å:- Chain J: E.8, D.12
- Chain L: E.8, D.12
5 PLIP interactions:3 interactions with chain L, 2 interactions with chain J- Metal complexes: L:E.8, L:D.12, L:D.12, J:E.8, J:D.12
ZN.51: 4 residues within 4Å:- Chain D: H.63
- Chain J: D.54, H.59
- Ligands: ACT.17
3 PLIP interactions:1 interactions with chain D, 1 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: D:H.63, J:H.59, H2O.8
ZN.52: 2 residues within 4Å:- Chain C: H.59
- Ligands: ACT.48
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.59
ZN.53: 3 residues within 4Å:- Chain C: A.1, D.39
- Chain J: H.77
3 PLIP interactions:1 interactions with chain J, 2 interactions with chain C- Metal complexes: J:H.77, C:A.1, C:D.39
ZN.58: 4 residues within 4Å:- Chain K: H.63
- Chain L: D.54, H.59
- Ligands: ACT.55
4 PLIP interactions:2 interactions with chain L, 1 interactions with chain K, 1 Ligand-Ligand interactions- Metal complexes: L:D.54, L:H.59, K:H.63, ACT.55
ZN.59: 3 residues within 4Å:- Chain K: H.77
- Chain L: A.1, D.39
3 PLIP interactions:2 interactions with chain L, 1 interactions with chain K- Metal complexes: L:A.1, L:D.39, K:H.77
ZN.60: 1 residues within 4Å:- Chain L: E.4
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:E.4
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ni, T.W. et al., Structural characterization of a microperoxidase inside a metal-directed protein cage. Angew.Chem.Int.Ed.Engl. (2010)
- Release Date
- 2011-01-12
- Peptides
- Soluble cytochrome b562: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- 36 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ni, T.W. et al., Structural characterization of a microperoxidase inside a metal-directed protein cage. Angew.Chem.Int.Ed.Engl. (2010)
- Release Date
- 2011-01-12
- Peptides
- Soluble cytochrome b562: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D