SMTL ID : 3m52.2 (1 other biounit)

Crystal structure of the BTB domain from the Miz-1/ZBTB17 transcription regulator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.8, H.11 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.8, H2O.1 ZN.2: 1 residues within 4Å: Chain A: H.36 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.36, H2O.1, H2O.1 ZN.3: 1 residues within 4Å: Chain A: E.89 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.89 ZN.4: 4 residues within 4Å: Chain A: D.57, D.60 Chain B: F.55, V.56 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.57, A:D.60, B:V.56 ZN.7: 2 residues within 4Å: Chain B: H.8, H.11 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.8, B:H.11 ZN.8: 2 residues within 4Å: Chain B: G.34, H.36 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.36

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: C.47, F.78, M.103, Q.104, D.105, I.106 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.78, A:M.103, A:D.105, A:I.106 Hydrogen bonds: A:Q.104, A:D.105 ACT.6: 6 residues within 4Å: Chain A: V.32, A.69, G.71, L.72, G.73, Q.74 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.71, A:L.72, A:G.73, A:Q.74, A:Q.74, A:Q.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J. et al., Insights into Strand Exchange in BTB Domain Dimers from the Crystal Structures of FAZF and Miz1. J.Mol.Biol. (2010)

Release Date

2010-06-09

Peptides

Zinc finger and BTB domain-containing protein 17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zinc finger and BTB domain-containing protein 17

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