SMTL ID : 3m5a.1

SET7/9 Y245A in complex with TAF10-K189me3 peptide and AdoHcy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 14 residues within 4Å: Chain A: I.118, A.121, E.123, G.159, N.160, H.188, K.189, A.190, N.191, H.192, Y.230, W.247, E.251 Chain B: K.5 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.123, A:E.123, A:E.123, A:N.191, A:H.192, A:E.251 Water bridges: A:E.123, A:E.123, A:G.159, A:N.177 Salt bridges: A:K.189 pi-Stacking: A:W.247, A:W.247, A:W.247

7 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)

CO.2: 2 residues within 4Å: Chain A: E.246, W.247 No protein-ligand interaction detected (PLIP) CO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CO.4: 2 residues within 4Å: Chain A: R.218, A.219 No protein-ligand interaction detected (PLIP) CO.5: 2 residues within 4Å: Chain A: S.69, T.70 No protein-ligand interaction detected (PLIP) CO.6: 2 residues within 4Å: Chain A: W.155 Chain B: K.3 No protein-ligand interaction detected (PLIP) CO.7: 2 residues within 4Å: Chain A: H.178, S.180 No protein-ligand interaction detected (PLIP) CO.8: 1 residues within 4Å: Chain A: H.178 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.178

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 7 residues within 4Å: Chain A: G.26, K.38, Y.51, R.74, P.75, F.77 Ligands: GOL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.51, A:R.74 Water bridges: A:K.38, A:K.38 GOL.10: 4 residues within 4Å: Chain A: Y.51, H.76, F.77 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.51, A:Y.51, A:F.77, A:F.77 GOL.11: 4 residues within 4Å: Chain A: G.36, E.37, K.38, I.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.37, A:K.38 Water bridges: A:E.27, A:T.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Rizzo, P.A. et al., SET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation. J.Biol.Chem. (2010)

Release Date

2010-07-28

Peptides

Histone-lysine N-methyltransferase SETD7: A
TAF10-K189me3 Peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETD7

TAF10-K189me3 Peptide

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