SMTL ID : 3m5w.1

Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.17, N.20, S.194, K.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.20, A:K.195 Salt bridges: A:H.17, A:K.195 SO4.2: 4 residues within 4Å: Chain A: G.261, Y.262, G.263, H.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.262, A:G.263, A:H.264 SO4.4: 3 residues within 4Å: Chain A: K.290, P.291, S.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.292, A:S.292, A:S.292 SO4.5: 4 residues within 4Å: Chain B: H.17, N.20, S.194, K.195 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.195 Salt bridges: B:H.17, B:K.195 SO4.6: 4 residues within 4Å: Chain B: K.290, P.291, S.292, H.293 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.290, B:S.292, B:H.293

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.206, E.207, K.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.207, A:K.208 GOL.7: 3 residues within 4Å: Chain B: H.45, T.48, Y.127 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.48 Water bridges: B:T.48, B:S.109 GOL.8: 8 residues within 4Å: Chain B: L.7, G.9, F.40, H.45, M.131, D.134, I.135, V.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.9, B:H.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni. To be Published (2010)

Release Date

2010-03-31

Peptides

Tryptophanyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tryptophanyl-tRNA synthetase

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