SMTL ID : 3m6o.2 (1 other biounit)

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: Q.48, C.91, H.133, E.134, H.137 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.91, A:H.133, A:H.137, H2O.9 ZN.2: 3 residues within 4Å: Chain A: Q.48, E.134 Ligands: ZN.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.134, A:E.134, H2O.2, H2O.9 ZN.3: 3 residues within 4Å: Chain A: D.40, G.62, E.63 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.40, A:D.40, A:E.63, H2O.2, H2O.9 ZN.4: 2 residues within 4Å: Chain A: E.160, E.179 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.160, A:E.160, A:E.179, A:E.179 ZN.5: 2 residues within 4Å: Chain A: Y.37, E.69 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.69, A:E.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fieulaine, S. et al., Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis. Plos Biol. (2011)

Release Date

2011-03-30

Peptides

Peptide deformylase 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptide deformylase 1B

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