SMTL ID : 3m6s.2 (1 other biounit)

Crystal structure of H1N1pdm Hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: N.68, D.90, N.91, C.94, P.141, R.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.225

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.27 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: K.47, G.50, N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.47

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 5 residues within 4Å: Chain C: N.68, D.90, N.91, C.94, R.225 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.225 NAG-NAG.5: 7 residues within 4Å: Chain E: N.68, E.70, D.90, N.91, C.94, P.141, R.225 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain E: T.19, D.21, N.27 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and Receptor binding properties of a pandemic H1N1 virus hemagglutinin. PLoS Curr (2010)

Release Date

2010-03-31

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

Hemagglutinin

Hemagglutinin

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