SMTL ID : 3m7n.1

archaeoglobus fulgidus exosome with RNA bound to the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x U- C- C- C- C: 5'-R(*C*UP*CP*CP*CP*C)-3'(Non-covalent)

U-C-C-C-C.1: 17 residues within 4Å: Chain F: M.81, V.86, R.96, R.97, A.132, D.133, S.136, R.137, D.180, N.181, D.186 Chain I: Y.70, I.79, I.80, R.107, D.110, R.114 Protein-ligand interaction information (PLIP) not available U-C-C-C-C.2: 21 residues within 4Å: Chain D: V.86, R.96, R.97, A.132, D.133, S.136, R.137, D.180, N.181 Chain G: E.68, P.69, Y.70, D.72, V.78, I.79, I.80, R.107, D.110, R.114, I.134, F.136 Protein-ligand interaction information (PLIP) not available U-C-C-C-C.3: 16 residues within 4Å: Chain E: V.86, E.87, R.96, R.97, A.132, D.133, S.136, R.137, D.180, N.181, D.186 Chain H: Y.70, I.79, I.80, R.107, R.114 Protein-ligand interaction information (PLIP) not available

3 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: C.143, N.145, C.146, C.159, C.162 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.143, A:C.146, A:C.159, A:C.162 ZN.5: 4 residues within 4Å: Chain B: C.143, C.146, C.159, C.162 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.143, B:C.146, B:C.159 ZN.6: 5 residues within 4Å: Chain C: C.143, N.145, C.146, C.159, C.162 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.143, C:C.146, C:C.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartung, S. et al., Quantitative analysis of processive RNA degradation by the archaeal RNA exosome. Nucleic Acids Res. (2010)

Release Date

2010-04-28

Peptides

Putative uncharacterized protein AF_0206: ABC
Probable exosome complex exonuclease 1: DEF
Probable exosome complex exonuclease 2: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

Putative uncharacterized protein AF_0206

Probable exosome complex exonuclease 1

Probable exosome complex exonuclease 2

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