SMTL ID : 3m9i.1

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) in E. coli polar lipids

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 2.50 Å

Oligo State

homo-octamer

Ligands

56 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.1: 7 residues within 4Å: Chain A: I.187, R.190, F.192 Ligands: 3PE.2, 3PE.15, 3PE.22, 3PE.23 Ligand excluded by PLIP 3PE.2: 8 residues within 4Å: Chain A: R.190 Chain C: F.192, W.196, W.199 Ligands: 3PE.1, 3PE.3, 3PE.15, 3PE.37 Ligand excluded by PLIP 3PE.3: 14 residues within 4Å: Chain A: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Chain C: G.122, W.196, I.204 Ligands: 3PE.2, 3PE.4, 3PE.6 Ligand excluded by PLIP 3PE.4: 10 residues within 4Å: Chain A: A.96, S.100 Chain C: S.120, G.122, Q.123, I.126, F.130, L.208 Ligands: 3PE.3, 3PE.7 Ligand excluded by PLIP 3PE.5: 8 residues within 4Å: Chain A: L.78, I.81 Chain C: F.67, L.77, V.203 Ligands: 3PE.6, 3PE.19, 3PE.26 Ligand excluded by PLIP 3PE.6: 14 residues within 4Å: Chain A: F.3, W.4, V.85, L.89 Chain C: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Ligands: 3PE.3, 3PE.5, 3PE.7 Ligand excluded by PLIP 3PE.7: 15 residues within 4Å: Chain A: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Chain C: F.130, L.133, L.208, F.215, L.216 Ligands: 3PE.4, 3PE.6 Ligand excluded by PLIP 3PE.8: 7 residues within 4Å: Chain B: I.187, R.190, F.192 Ligands: 3PE.9, 3PE.15, 3PE.16, 3PE.22 Ligand excluded by PLIP 3PE.9: 8 residues within 4Å: Chain B: R.190 Chain D: F.192, W.196, W.199 Ligands: 3PE.8, 3PE.10, 3PE.22, 3PE.30 Ligand excluded by PLIP 3PE.10: 14 residues within 4Å: Chain B: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Chain D: G.122, W.196, I.204 Ligands: 3PE.9, 3PE.11, 3PE.13 Ligand excluded by PLIP 3PE.11: 10 residues within 4Å: Chain B: A.96, S.100 Chain D: S.120, G.122, Q.123, I.126, F.130, L.208 Ligands: 3PE.10, 3PE.14 Ligand excluded by PLIP 3PE.12: 8 residues within 4Å: Chain B: L.78, I.81 Chain D: F.67, L.77, V.203 Ligands: 3PE.13, 3PE.19, 3PE.26 Ligand excluded by PLIP 3PE.13: 14 residues within 4Å: Chain B: F.3, W.4, V.85, L.89 Chain D: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Ligands: 3PE.10, 3PE.12, 3PE.14 Ligand excluded by PLIP 3PE.14: 15 residues within 4Å: Chain B: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Chain D: F.130, L.133, L.208, F.215, L.216 Ligands: 3PE.11, 3PE.13 Ligand excluded by PLIP 3PE.15: 7 residues within 4Å: Chain C: I.187, R.190, F.192 Ligands: 3PE.1, 3PE.2, 3PE.8, 3PE.16 Ligand excluded by PLIP 3PE.16: 8 residues within 4Å: Chain B: F.192, W.196, W.199 Chain C: R.190 Ligands: 3PE.8, 3PE.15, 3PE.17, 3PE.44 Ligand excluded by PLIP 3PE.17: 14 residues within 4Å: Chain B: G.122, W.196, I.204 Chain C: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Ligands: 3PE.16, 3PE.18, 3PE.20 Ligand excluded by PLIP 3PE.18: 10 residues within 4Å: Chain B: S.120, G.122, Q.123, I.126, F.130, L.208 Chain C: A.96, S.100 Ligands: 3PE.17, 3PE.21 Ligand excluded by PLIP 3PE.19: 8 residues within 4Å: Chain B: F.67, L.77, V.203 Chain C: L.78, I.81 Ligands: 3PE.5, 3PE.12, 3PE.20 Ligand excluded by PLIP 3PE.20: 14 residues within 4Å: Chain B: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Chain C: F.3, W.4, V.85, L.89 Ligands: 3PE.17, 3PE.19, 3PE.21 Ligand excluded by PLIP 3PE.21: 15 residues within 4Å: Chain B: F.130, L.133, L.208, F.215, L.216 Chain C: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Ligands: 3PE.18, 3PE.20 Ligand excluded by PLIP 3PE.22: 7 residues within 4Å: Chain D: I.187, R.190, F.192 Ligands: 3PE.1, 3PE.8, 3PE.9, 3PE.23 Ligand excluded by PLIP 3PE.23: 8 residues within 4Å: Chain A: F.192, W.196, W.199 Chain D: R.190 Ligands: 3PE.1, 3PE.22, 3PE.24, 3PE.51 Ligand excluded by PLIP 3PE.24: 14 residues within 4Å: Chain A: G.122, W.196, I.204 Chain D: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Ligands: 3PE.23, 3PE.25, 3PE.27 Ligand excluded by PLIP 3PE.25: 10 residues within 4Å: Chain A: S.120, G.122, Q.123, I.126, F.130, L.208 Chain D: A.96, S.100 Ligands: 3PE.24, 3PE.28 Ligand excluded by PLIP 3PE.26: 8 residues within 4Å: Chain A: F.67, L.77, V.203 Chain D: L.78, I.81 Ligands: 3PE.5, 3PE.12, 3PE.27 Ligand excluded by PLIP 3PE.27: 14 residues within 4Å: Chain A: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Chain D: F.3, W.4, V.85, L.89 Ligands: 3PE.24, 3PE.26, 3PE.28 Ligand excluded by PLIP 3PE.28: 15 residues within 4Å: Chain A: F.130, L.133, L.208, F.215, L.216 Chain D: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Ligands: 3PE.25, 3PE.27 Ligand excluded by PLIP 3PE.29: 7 residues within 4Å: Chain E: I.187, R.190, F.192 Ligands: 3PE.30, 3PE.43, 3PE.50, 3PE.51 Ligand excluded by PLIP 3PE.30: 8 residues within 4Å: Chain E: R.190 Chain G: F.192, W.196, W.199 Ligands: 3PE.9, 3PE.29, 3PE.31, 3PE.43 Ligand excluded by PLIP 3PE.31: 14 residues within 4Å: Chain E: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Chain G: G.122, W.196, I.204 Ligands: 3PE.30, 3PE.32, 3PE.34 Ligand excluded by PLIP 3PE.32: 10 residues within 4Å: Chain E: A.96, S.100 Chain G: S.120, G.122, Q.123, I.126, F.130, L.208 Ligands: 3PE.31, 3PE.35 Ligand excluded by PLIP 3PE.33: 8 residues within 4Å: Chain E: L.78, I.81 Chain G: F.67, L.77, V.203 Ligands: 3PE.34, 3PE.47, 3PE.54 Ligand excluded by PLIP 3PE.34: 14 residues within 4Å: Chain E: F.3, W.4, V.85, L.89 Chain G: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Ligands: 3PE.31, 3PE.33, 3PE.35 Ligand excluded by PLIP 3PE.35: 15 residues within 4Å: Chain E: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Chain G: F.130, L.133, L.208, F.215, L.216 Ligands: 3PE.32, 3PE.34 Ligand excluded by PLIP 3PE.36: 7 residues within 4Å: Chain F: I.187, R.190, F.192 Ligands: 3PE.37, 3PE.43, 3PE.44, 3PE.50 Ligand excluded by PLIP 3PE.37: 8 residues within 4Å: Chain F: R.190 Chain H: F.192, W.196, W.199 Ligands: 3PE.2, 3PE.36, 3PE.38, 3PE.50 Ligand excluded by PLIP 3PE.38: 14 residues within 4Å: Chain F: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Chain H: G.122, W.196, I.204 Ligands: 3PE.37, 3PE.39, 3PE.41 Ligand excluded by PLIP 3PE.39: 10 residues within 4Å: Chain F: A.96, S.100 Chain H: S.120, G.122, Q.123, I.126, F.130, L.208 Ligands: 3PE.38, 3PE.42 Ligand excluded by PLIP 3PE.40: 8 residues within 4Å: Chain F: L.78, I.81 Chain H: F.67, L.77, V.203 Ligands: 3PE.41, 3PE.47, 3PE.54 Ligand excluded by PLIP 3PE.41: 14 residues within 4Å: Chain F: F.3, W.4, V.85, L.89 Chain H: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Ligands: 3PE.38, 3PE.40, 3PE.42 Ligand excluded by PLIP 3PE.42: 15 residues within 4Å: Chain F: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Chain H: F.130, L.133, L.208, F.215, L.216 Ligands: 3PE.39, 3PE.41 Ligand excluded by PLIP 3PE.43: 7 residues within 4Å: Chain G: I.187, R.190, F.192 Ligands: 3PE.29, 3PE.30, 3PE.36, 3PE.44 Ligand excluded by PLIP 3PE.44: 8 residues within 4Å: Chain F: F.192, W.196, W.199 Chain G: R.190 Ligands: 3PE.16, 3PE.36, 3PE.43, 3PE.45 Ligand excluded by PLIP 3PE.45: 14 residues within 4Å: Chain F: G.122, W.196, I.204 Chain G: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Ligands: 3PE.44, 3PE.46, 3PE.48 Ligand excluded by PLIP 3PE.46: 10 residues within 4Å: Chain F: S.120, G.122, Q.123, I.126, F.130, L.208 Chain G: A.96, S.100 Ligands: 3PE.45, 3PE.49 Ligand excluded by PLIP 3PE.47: 8 residues within 4Å: Chain F: F.67, L.77, V.203 Chain G: L.78, I.81 Ligands: 3PE.33, 3PE.40, 3PE.48 Ligand excluded by PLIP 3PE.48: 14 residues within 4Å: Chain F: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Chain G: F.3, W.4, V.85, L.89 Ligands: 3PE.45, 3PE.47, 3PE.49 Ligand excluded by PLIP 3PE.49: 15 residues within 4Å: Chain F: F.130, L.133, L.208, F.215, L.216 Chain G: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Ligands: 3PE.46, 3PE.48 Ligand excluded by PLIP 3PE.50: 7 residues within 4Å: Chain H: I.187, R.190, F.192 Ligands: 3PE.29, 3PE.36, 3PE.37, 3PE.51 Ligand excluded by PLIP 3PE.51: 8 residues within 4Å: Chain E: F.192, W.196, W.199 Chain H: R.190 Ligands: 3PE.23, 3PE.29, 3PE.50, 3PE.52 Ligand excluded by PLIP 3PE.52: 14 residues within 4Å: Chain E: G.122, W.196, I.204 Chain H: F.11, L.88, L.89, Y.99, F.183, I.187, L.188, R.190 Ligands: 3PE.51, 3PE.53, 3PE.55 Ligand excluded by PLIP 3PE.53: 10 residues within 4Å: Chain E: S.120, G.122, Q.123, I.126, F.130, L.208 Chain H: A.96, S.100 Ligands: 3PE.52, 3PE.56 Ligand excluded by PLIP 3PE.54: 8 residues within 4Å: Chain E: F.67, L.77, V.203 Chain H: L.78, I.81 Ligands: 3PE.33, 3PE.40, 3PE.55 Ligand excluded by PLIP 3PE.55: 14 residues within 4Å: Chain E: F.67, L.70, V.71, S.73, V.203, I.204, G.207 Chain H: F.3, W.4, V.85, L.89 Ligands: 3PE.52, 3PE.54, 3PE.56 Ligand excluded by PLIP 3PE.56: 15 residues within 4Å: Chain E: F.130, L.133, L.208, F.215, L.216 Chain H: A.1, W.4, R.5, I.7, F.8, F.11, A.86, L.89 Ligands: 3PE.53, 3PE.55 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hite, R.K. et al., Principles of membrane protein interactions with annular lipids deduced from aquaporin-0 2D crystals. Embo J. (2010)

Release Date

2010-05-12

Peptides

Lens fiber major intrinsic protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Membrane

We predict this structure to be a membrane protein.
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Lens fiber major intrinsic protein