SMTL ID : 3maw.2 (1 other biounit)

Structure of the Newcastle disease virus F protein in the post-fusion conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-trimer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.54, T.58, S.247, Q.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.248 NAG-NAG.2: 3 residues within 4Å: Chain A: Q.414, N.416 Chain B: N.37 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: N.54, T.58, S.247, Q.248 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.248 NAG-NAG.5: 3 residues within 4Å: Chain B: Q.414, N.416 Chain C: N.37 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: N.54, T.58, S.247, Q.248 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.248 NAG-NAG.8: 3 residues within 4Å: Chain A: N.37 Chain C: Q.414, N.416 No protein-ligand interaction detected (PLIP)

3 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG.3: 1 residues within 4Å: Chain A: N.440 No protein-ligand interaction detected (PLIP) NDG.6: 1 residues within 4Å: Chain B: N.440 No protein-ligand interaction detected (PLIP) NDG.9: 1 residues within 4Å: Chain C: N.440 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swanson, K. et al., Structure of the Newcastle disease virus F protein in the post-fusion conformation. Virology (2010)

Release Date

2010-05-26

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Fusion glycoprotein F0

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