SMTL ID : 3max.3 (2 other biounits)

Crystal Structure of Human HDAC2 complexed with an N-(2-aminophenyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.170, H.172, D.258 Ligands: LLX.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.170, A:D.170, A:H.172, A:D.258

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.168, D.170, H.172, S.191, F.192, H.193 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.168, A:D.168, A:D.170, A:H.172, A:S.191

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: F.181, T.184, V.187, Y.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.184, A:V.187 Water bridges: A:T.189

1 x LLX: N-(4-aminobiphenyl-3-yl)benzamide(Non-covalent)

LLX.4: 21 residues within 4Å: Chain A: Y.18, M.24, R.28, F.103, G.132, L.133, H.134, H.135, G.143, F.144, C.145, D.170, H.172, F.199, Q.254, D.258, L.265, G.294, G.295, Y.297 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.103, A:L.133, A:L.133, A:L.133, A:F.144, A:F.199, A:L.265 Hydrogen bonds: A:H.135, A:G.143 pi-Stacking: A:F.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bressi, J.C. et al., Exploration of the HDAC2 foot pocket: Synthesis and SAR of substituted N-(2-aminophenyl)benzamides. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-04-28

Peptides

Histone deacetylase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Histone deacetylase 2

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