SMTL ID : 3mbv.1

Structure of bacterirhodopsin crystallized in betta-XylOC(16+4) meso phase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 15 residues within 4Å: Chain A: W.86, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.90, A:L.93, A:M.145, A:W.182, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:A.215, A:K.216 RET.3: 15 residues within 4Å: Chain B: W.86, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.90, B:L.93, B:M.145, B:W.182, B:W.182, B:Y.185, B:Y.185, B:Y.185, B:Y.185, B:P.186, B:W.189, B:A.215, B:K.216 RET.5: 15 residues within 4Å: Chain C: W.86, T.90, L.93, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:T.90, C:L.93, C:M.145, C:W.182, C:W.182, C:Y.185, C:Y.185, C:Y.185, C:Y.185, C:P.186, C:W.189, C:A.215, C:K.216

3 x BXC: (3R,7R,11R)-3,7,11,15-tetramethylhexadecyl alpha-D-ribopyranoside(Non-covalent)

BXC.2: 13 residues within 4Å: Chain A: L.28, G.31, K.40, Y.43, A.44, T.47, A.51, F.54 Chain B: G.106, A.110, I.140, A.144, Y.147 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:L.28, A:T.47, A:A.51, A:F.54, A:F.54, A:F.54, B:A.110, B:I.140, B:A.144, B:Y.147 Water bridges: A:L.28, A:Y.43 BXC.4: 13 residues within 4Å: Chain B: L.28, G.31, K.40, Y.43, A.44, T.47, A.51, F.54 Chain C: G.106, A.110, I.140, A.144, Y.147 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:L.28, B:T.47, B:A.51, B:F.54, B:F.54, B:F.54, C:A.110, C:I.140, C:A.144, C:Y.147 Water bridges: B:L.28, B:Y.43 BXC.6: 13 residues within 4Å: Chain A: G.106, A.110, I.140, A.144, Y.147 Chain C: L.28, G.31, K.40, Y.43, A.44, T.47, A.51, F.54 12 PLIP interactions: 8 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.28, C:T.47, C:A.51, C:F.54, C:F.54, C:F.54, A:A.110, A:I.140, A:A.144, A:Y.147 Water bridges: C:L.28, C:Y.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borshchevskiy, V. et al., Isoprenoid-chained lipid beta-XylOC16+4 A novel molecule for in meso membrane protein crystallization. J.Cryst.Growth (2010)

Release Date

2010-11-03

Peptides

Bacteriorhodopsin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin

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