SMTL ID : 3mbw.1

Crystal structure of the human ephrin A2 LBD and CRD domains in complex with ephrin A1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain B: F.34, N.36, N.39, P.62, H.63, Y.64 Chain C: D.82, K.140 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:K.140 Hydrogen bonds: C:D.82, C:K.140 NAG-NAG-BMA-MAN.3: 8 residues within 4Å: Chain A: D.82, K.140 Chain D: F.34, N.36, N.39, P.62, H.63, Y.64 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.140 Hydrogen bonds: A:D.82, A:D.82, A:K.140

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: D.152, E.170 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain C: D.152, E.170 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himanen, J.P. et al., Architecture of Eph receptor clusters. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-09

Peptides

Ephrin type-A receptor 2: AC
Ephrin-A1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Ephrin type-A receptor 2

Ephrin-A1