SMTL ID : 3mdd.1

CRYSTAL STRUCTURES OF MEDIUM CHAIN ACYL-COA DEHYDROGENASE FROM PIG LIVER MITOCHONDRIA WITH AND WITHOUT SUBSTRATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: Y.123, V.125, T.126, G.131, S.132, W.156, I.157, T.158, N.204, I.361, I.364, T.368, Q.370, I.371, I.374 Chain B: R.271, T.273, F.274, L.278, H.281, I.284, Q.339, V.340, G.342, G.343, F.346 Chain D: Q.282 30 PLIP interactions: 10 interactions with chain B, 18 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: B:F.346, A:W.156, A:I.361 Hydrogen bonds: B:T.273, B:Q.339, B:Q.339, B:G.343, A:Y.123, A:V.125, A:T.126, A:T.126, A:S.132, A:S.132, A:T.158, A:T.158, A:T.368, A:T.368, A:Q.370, D:Q.282, D:Q.282 Water bridges: B:R.271, B:N.344, A:Y.123, A:A.130, A:D.133, A:E.366, A:G.367 Salt bridges: B:R.271, B:R.271 pi-Stacking: B:H.281 FAD.2: 27 residues within 4Å: Chain A: R.271, T.273, F.274, L.278, H.281, I.284, Q.339, V.340, G.342, G.343 Chain B: Y.123, V.125, T.126, G.131, S.132, W.156, T.158, N.204, I.361, I.364, Y.365, E.366, T.368, Q.370, I.371, I.374 Chain C: Q.282 27 PLIP interactions: 15 interactions with chain B, 10 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:W.156 Hydrogen bonds: B:Y.123, B:V.125, B:T.126, B:T.126, B:S.132, B:S.132, B:T.158, B:T.158, B:E.366, B:T.368, B:T.368, B:Q.370, A:T.273, A:Q.339, A:Q.339, A:G.343, C:Q.282, C:Q.282 Water bridges: B:G.131, B:G.131, A:R.271, A:R.271, A:N.344, A:N.344 Salt bridges: A:R.271, A:R.271 FAD.3: 27 residues within 4Å: Chain B: Q.282 Chain C: Y.123, V.125, T.126, G.131, S.132, W.156, I.157, T.158, N.204, I.361, I.364, T.368, Q.370, I.371, I.374 Chain D: R.271, T.273, F.274, L.278, H.281, I.284, Q.339, V.340, G.342, G.343, F.346 31 PLIP interactions: 20 interactions with chain C, 9 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: C:W.156, C:I.361, D:F.346 Hydrogen bonds: C:Y.123, C:V.125, C:T.126, C:T.126, C:S.132, C:S.132, C:T.158, C:T.368, C:Q.370, D:Q.339, D:Q.339, D:G.343, B:Q.282, B:Q.282 Water bridges: C:Y.123, C:A.130, C:D.133, C:T.158, C:T.158, C:E.366, C:E.366, C:E.366, C:G.367, D:R.271, D:N.344 Salt bridges: D:R.271, D:R.271 pi-Stacking: D:H.281 FAD.4: 27 residues within 4Å: Chain A: Q.282 Chain C: R.271, T.273, F.274, L.278, H.281, I.284, Q.339, V.340, G.342, G.343 Chain D: Y.123, V.125, T.126, G.131, S.132, W.156, T.158, N.204, I.361, I.364, Y.365, E.366, T.368, Q.370, I.371, I.374 26 PLIP interactions: 15 interactions with chain D, 9 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: D:W.156 Hydrogen bonds: D:Y.123, D:V.125, D:T.126, D:T.126, D:S.132, D:S.132, D:T.158, D:E.366, D:T.368, D:Q.370, C:Q.339, C:Q.339, C:G.343, A:Q.282, A:Q.282 Water bridges: D:G.131, D:G.131, D:T.158, D:T.158, C:R.271, C:R.271, C:N.344, C:N.344 Salt bridges: C:R.271, C:R.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J.J. et al., Crystal structures of medium-chain acyl-CoA dehydrogenase from pig liver mitochondria with and without substrate. Proc.Natl.Acad.Sci.USA (1993)

Release Date

1994-09-30

Peptides

MEDIUM CHAIN ACYL-COA DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

MEDIUM CHAIN ACYL-COA DEHYDROGENASE

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