SMTL ID : 3mdi.1

Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im in complex with RNA UGUAAA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

1 x U- G- U- A- A- A: RNA (5'-R(*UP*GP*UP*AP*AP*A)-3')(Non-covalent)

U-G-U-A-A-A.1: 19 residues within 4Å: Chain A: E.55, S.58, S.59, V.60, R.63, L.99, G.100, T.101, T.102, F.103, F.104, N.190, K.192, A.205, P.206, G.207, Y.208, G.209 Ligands: GOL.2 Protein-ligand interaction information (PLIP) not available

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.81, F.103, F.104, K.105, L.106, K.172, I.211 Ligands: U-G-U-A-A-A.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.106, A:L.106, A:K.172 Water bridges: A:Q.157 GOL.3: 7 residues within 4Å: Chain B: E.81, F.103, F.104, K.105, L.106, I.211, I.212 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.81, B:L.106 Water bridges: B:K.172, B:I.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Q. et al., Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-02

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cleavage and polyadenylation specificity factor subunit 5

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