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SMTL ID : 3mdq.1
Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
monomer
Ligands
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.1:
2 residues within 4Å:
Chain A:
G.111
,
A.112
Ligand excluded by PLIP
CL.2:
3 residues within 4Å:
Chain A:
T.46
,
R.165
,
R.169
Ligand excluded by PLIP
4 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.3:
8 residues within 4Å:
Chain A:
G.12
,
T.13
,
T.82
,
E.114
,
G.139
,
G.140
,
G.141
,
S.142
12
PLIP interactions
:
12 interactions with chain A
Hydrogen bonds:
A:T.13
,
A:T.13
,
A:T.13
,
A:N.14
,
A:T.82
,
A:S.83
,
A:G.140
,
A:G.141
,
A:S.142
Water bridges:
A:A.84
,
A:D.137
,
A:I.138
SO4.4:
5 residues within 4Å:
Chain A:
N.14
,
T.15
,
G.212
,
T.213
,
R.269
13
PLIP interactions
:
13 interactions with chain A
Hydrogen bonds:
A:N.14
,
A:T.15
,
A:T.15
,
A:G.140
,
A:T.213
Water bridges:
A:T.15
,
A:G.212
,
A:G.212
,
A:G.212
,
A:G.212
,
A:T.213
,
A:R.269
Salt bridges:
A:R.269
SO4.5:
5 residues within 4Å:
Chain A:
H.17
,
K.35
,
G.212
,
D.215
,
R.269
5
PLIP interactions
:
5 interactions with chain A
Water bridges:
A:H.17
,
A:G.212
Salt bridges:
A:H.17
,
A:K.35
,
A:R.269
SO4.6:
4 residues within 4Å:
Chain A:
H.171
,
V.172
,
H.173
,
D.174
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:D.174
Water bridges:
A:R.177
Salt bridges:
A:H.171
,
A:H.173
3 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.7:
3 residues within 4Å:
Chain A:
T.51
,
E.52
,
E.53
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:E.52
,
A:E.53
,
A:E.53
Water bridges:
A:T.51
GOL.8:
4 residues within 4Å:
Chain A:
V.182
,
H.185
,
N.186
,
D.189
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:N.186
GOL.9:
7 residues within 4Å:
Chain A:
L.19
,
T.21
,
T.30
,
Y.297
,
E.301
,
L.304
,
Y.305
8
PLIP interactions
:
8 interactions with chain A
Hydrogen bonds:
A:T.30
,
A:Y.305
,
A:Y.305
Water bridges:
A:T.30
,
A:N.33
,
A:N.33
,
A:Y.297
,
A:E.301
Links
RCSB
PDBe
PDBj
PDBsum
CATH
PLIP
Citation
Joint Center for Structural Genomics (JCSG), Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution. To be published
Release Date
2010-05-12
Peptides
Exopolyphosphatase:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Export Alignment
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PNG Image
Secondary Structure
None
DSSP
PSIPRED
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Colour Scheme
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
SOA
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Entropy
Chain
Unique Chain
Rainbow
Structure
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Background
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NGL
PV
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Exopolyphosphatase
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
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Outline
Fog
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Transparent
Resolution
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