SMTL ID : 3mdq.1

Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: G.111, A.112 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: T.46, R.165, R.169 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: G.12, T.13, T.82, E.114, G.139, G.140, G.141, S.142 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.13, A:T.13, A:T.13, A:N.14, A:T.82, A:S.83, A:G.140, A:G.141, A:S.142 Water bridges: A:A.84, A:D.137, A:I.138 SO4.4: 5 residues within 4Å: Chain A: N.14, T.15, G.212, T.213, R.269 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.14, A:T.15, A:T.15, A:G.140, A:T.213 Water bridges: A:T.15, A:G.212, A:G.212, A:G.212, A:G.212, A:T.213, A:R.269 Salt bridges: A:R.269 SO4.5: 5 residues within 4Å: Chain A: H.17, K.35, G.212, D.215, R.269 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.17, A:G.212 Salt bridges: A:H.17, A:K.35, A:R.269 SO4.6: 4 residues within 4Å: Chain A: H.171, V.172, H.173, D.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.174 Water bridges: A:R.177 Salt bridges: A:H.171, A:H.173

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: T.51, E.52, E.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52, A:E.53, A:E.53 Water bridges: A:T.51 GOL.8: 4 residues within 4Å: Chain A: V.182, H.185, N.186, D.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.186 GOL.9: 7 residues within 4Å: Chain A: L.19, T.21, T.30, Y.297, E.301, L.304, Y.305 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.30, A:Y.305, A:Y.305 Water bridges: A:T.30, A:N.33, A:N.33, A:Y.297, A:E.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an Exopolyphosphatase (CHU_0316) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution. To be published

Release Date

2010-05-12

Peptides

Exopolyphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exopolyphosphatase