SMTL ID : 3me2.1

Crystal structure of mouse RANKL-RANK complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: S.39, S.40, W.41, L.55, N.57, G.58 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: Y.42, H.43, D.44, R.45 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: F.135, K.136 Chain B: K.84 Chain E: W.47, K.49 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: Y.75, H.88, K.89, P.108, R.109 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain C: S.39, S.40, W.41, L.55, N.57, G.58 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain C: Y.42, H.43, D.44, R.45 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: W.47, K.49 Chain C: F.135, K.136 Chain D: K.84 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain D: Y.75, H.88, K.89, P.108, R.109 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain E: S.39, S.40, W.41, L.55, N.57, G.58 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain E: Y.42, H.43, D.44, R.45 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain C: W.47, K.49 Chain E: F.135, K.136 Chain F: K.84 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain F: Y.75, H.88, K.89, P.108, R.109 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain B: C.132, A.133, F.136, S.159, V.161 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.132, B:S.159 Water bridges: B:S.163 NA.9: 5 residues within 4Å: Chain D: C.132, A.133, F.136, S.159, V.161 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.159, D:V.161 Water bridges: D:S.163 NA.14: 5 residues within 4Å: Chain F: C.132, A.133, F.136, S.159, V.161 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:C.132, F:S.159 Water bridges: F:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Structural and Functional Insights of RANKL-RANK Interaction and Signaling. J.Immunol. (2010)

Release Date

2010-06-02

Peptides

Tumor necrosis factor ligand superfamily member 11: ACE
Tumor necrosis factor receptor superfamily member 11A: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
R

D
R

F
R

Tumor necrosis factor ligand superfamily member 11

Tumor necrosis factor receptor superfamily member 11A

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