SMTL ID : 3mek.1

Crystal Structure of Human Histone-Lysine N-methyltransferase SMYD3 in Complex with S-adenosyl-L-methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.63, C.66, H.84, C.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:H.84, A:C.88 ZN.2: 4 residues within 4Å: Chain A: C.50, C.53, C.72, C.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.50, A:C.53, A:C.72, A:C.76 ZN.3: 4 residues within 4Å: Chain A: C.209, C.262, C.264, C.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.209, A:C.262, A:C.264, A:C.267

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 16 residues within 4Å: Chain A: R.15, G.16, N.17, Y.125, E.131, N.133, C.181, N.182, S.203, L.204, L.205, N.206, H.207, Y.240, Y.258, F.260 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.17, A:Y.125, A:E.131, A:N.133, A:N.133, A:N.206, A:N.206, A:H.207, A:H.207, A:Y.240 Water bridges: A:R.15, A:E.131, A:E.131, A:S.203, A:D.263 pi-Stacking: A:F.260, A:F.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lam, R. et al., Crystal Structure of Human Histone-Lysine N-methyltransferase SMYD3 in Complex with S-adenosyl-L-methionine. To be Published

Release Date

2010-04-14

Peptides

SET and MYND domain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SET and MYND domain-containing protein 3

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