SMTL ID : 3mfy.1

Structural characterization of the subunit A mutant F236A of the A-ATP synthase from Pyrococcus horikoshii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: H.245, Q.246, K.249, A.507 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.245, A:K.249 MPD.2: 7 residues within 4Å: Chain A: E.454, M.458, K.461, R.525, L.528, N.529, D.532 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.528 Hydrogen bonds: A:E.454, A:R.525 Water bridges: A:E.454 MPD.4: 8 residues within 4Å: Chain A: A.330, D.331, S.332, T.333, F.367, Y.368, G.390, A.391 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.367 Hydrogen bonds: A:S.332 MPD.5: 6 residues within 4Å: Chain A: D.420, L.421, R.424, N.431, W.432, L.433 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.421, A:W.432, A:L.433 Hydrogen bonds: A:D.420 MPD.6: 3 residues within 4Å: Chain A: K.198, P.200, Y.201 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.201 Hydrogen bonds: A:Y.201, A:Y.201, A:Y.201 Water bridges: A:K.198

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: P.551, Q.578, E.581, L.582 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.546

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.7: 1 residues within 4Å: Chain A: V.173 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding. J.Mol.Biol. (2010)

Release Date

2010-07-07

Peptides

V-type ATP synthase alpha chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

V-type ATP synthase alpha chain