SMTL ID : 3mge.1

X-ray Structure of Hexameric HIV-1 CA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: M.68, E.71, T.72, E.75, K.140 Chain F: L.211, E.212 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:L.211, F:E.212, A:E.75, A:K.140 EDO.2: 7 residues within 4Å: Chain B: M.68, E.71, T.72, E.75, K.140 Chain D: L.211, E.212 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:L.211, D:E.212, B:E.75, B:K.140 EDO.3: 7 residues within 4Å: Chain C: M.68, E.71, T.72, E.75, K.140 Chain E: L.211, E.212 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:L.211, E:E.212, C:E.75, C:K.140 EDO.4: 7 residues within 4Å: Chain C: L.211, E.212 Chain D: M.68, E.71, T.72, E.75, K.140 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:L.211, C:E.212, D:E.75, D:K.140 EDO.5: 7 residues within 4Å: Chain A: L.211, E.212 Chain E: M.68, E.71, T.72, E.75, K.140 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:E.75, E:K.140, A:L.211, A:E.212 EDO.6: 7 residues within 4Å: Chain B: L.211, E.212 Chain F: M.68, E.71, T.72, E.75, K.140 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:L.211, B:E.212, F:E.75, F:K.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pornillos, O. et al., Disulfide Bond Stabilization of the Hexameric Capsomer of Human Immunodeficiency Virus. J.Mol.Biol. (2010)

Release Date

2010-07-21

Peptides

Capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein p24