SMTL ID : 3mhk.1

Human tankyrase 2 - catalytic PARP domain in complex with 2-(2-pyridyl)-7,8-dihydro-5h-thiino[4,3-d]pyrimidin-4-ol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:H.134, A:C.139, A:C.142

1 x P4L: 2-pyridin-2-yl-7,8-dihydro-5H-thiopyrano[4,3-d]pyrimidin-4-ol(Non-covalent)

P4L.2: 12 residues within 4Å: Chain A: H.81, G.82, S.83, Y.100, Y.110, F.111, A.112, K.117, S.118, Y.121, I.125, E.188 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.100, A:Y.121, A:Y.121, A:I.125 Hydrogen bonds: A:G.82 Water bridges: A:S.83 pi-Stacking: A:Y.121

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: G.103, M.104, Y.110, L.184, E.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.104, A:K.117, A:K.117 Water bridges: A:E.188 GOL.4: 5 residues within 4Å: Chain A: H.29, R.30, D.31, Q.120, A.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.30, A:D.31, A:D.31, A:Q.120 GOL.5: 4 residues within 4Å: Chain A: V.50, C.51, W.56, Y.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.52, A:E.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wahlberg, E. et al., Family-wide chemical profiling and structural analysis of PARP and tankyrase inhibitors. Nat.Biotechnol. (2012)

Release Date

2010-05-05

Peptides

Tankyrase-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tankyrase-2