SMTL ID : 3mid.1

Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound azide obtained by soaking (100mM NaN3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.06 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.65, H.66, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.65, A:H.66, A:H.130 CU.2: 4 residues within 4Å: Chain A: H.200, H.202, M.272 Ligands: AZI.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.200, A:H.202

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 3 residues within 4Å: Chain A: H.193, D.240 Ligands: AZI.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.193, H2O.1, H2O.1

3 x AZI: AZIDE ION(Non-covalent)

AZI.4: 3 residues within 4Å: Chain A: H.193, D.240 Ligands: NI.3 No protein-ligand interaction detected (PLIP) AZI.5: 5 residues within 4Å: Chain A: H.200, H.202, G.266, M.272 Ligands: CU.2 No protein-ligand interaction detected (PLIP) AZI.6: 6 residues within 4Å: Chain A: V.213, R.214, N.215, G.216, G.244, I.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.213, A:N.215, A:G.216

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: L.96, Y.97, T.106, A.196, F.232, M.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.96, A:A.98 GOL.8: 9 residues within 4Å: Chain A: N.94, L.96, F.114, R.115, V.116, G.121, S.122, A.160, S.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.94, A:R.115, A:S.122, A:S.122, A:A.160 GOL.9: 7 residues within 4Å: Chain A: Y.163, Q.186, Y.187, K.188, M.189, M.290, T.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.163, A:Y.163, A:K.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chufan, E.E. et al., Differential Reactivity Between the Two Copper Sites of Peptidylglycine alpha-Hydroxylating Monooxygenase (PHM). J.Am.Chem.Soc. (2010)

Release Date

2010-11-24

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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