SMTL ID : 3mih.1

Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound azide, obtained in the presence of substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.65, H.66, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.65, A:H.66, A:H.130 CU.2: 4 residues within 4Å: Chain A: H.200, H.202, M.272 Ligands: AZI.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.200, A:H.202

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 3 residues within 4Å: Chain A: H.193, D.240 Ligands: AZI.11 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.193, H2O.1, H2O.1, H2O.1

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 4 residues within 4Å: Chain A: K.56, S.148, V.149, H.150 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: D.54, H.150 Ligands: AZI.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.54, A:H.150 NA.6: 1 residues within 4Å: Ligands: AZI.12 No protein-ligand interaction detected (PLIP) NA.7: 4 residues within 4Å: Chain A: E.256, G.257, R.258 Ligands: AZI.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.257 NA.8: 2 residues within 4Å: Chain A: C.84 Ligands: AZI.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.84

6 x AZI: AZIDE ION(Non-covalent)(Non-functional Binders)

AZI.9: 3 residues within 4Å: Chain A: L.15, H.150 Ligands: NA.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.150 AZI.10: 6 residues within 4Å: Chain A: H.200, H.202, G.266, M.272 Ligands: CU.2, NA.8 No protein-ligand interaction detected (PLIP) AZI.11: 2 residues within 4Å: Chain A: H.193 Ligands: NI.3 No protein-ligand interaction detected (PLIP) AZI.12: 1 residues within 4Å: Ligands: NA.6 No protein-ligand interaction detected (PLIP) AZI.13: 2 residues within 4Å: Chain A: H.203 Ligands: NA.7 No protein-ligand interaction detected (PLIP) AZI.14: 6 residues within 4Å: Chain A: V.213, R.214, N.215, G.216, G.244, I.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.215, A:G.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chufan, E.E. et al., Differential Reactivity Between the Two Copper Sites of Peptidylglycine alpha-Hydroxylating Monooxygenase (PHM). J.Am.Chem.Soc. (2010)

Release Date

2010-11-24

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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