SMTL ID : 3mj0.1

Crystal Structure of Drosophia Ago-PAZ domain in complex with 3'-end 2'-O-methylated RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x C- G- U- U- A- C- G- C- OMU: RNA (5'-R(*CP*GP*UP*UP*AP*CP*GP*CP*(OMU))-3')(Non-covalent)

C-G-U-U-A-C-G-C-OMU.1: 13 residues within 4Å: Chain A: Y.42, F.48, R.53, Y.55, F.70, H.72, I.79, Y.82, F.83, K.105, S.106, I.107, L.108 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.70 Hydrogen bonds: A:Y.42, A:Y.82, A:Y.82, A:K.105, A:L.108 Water bridges: A:R.53, A:E.71 Salt bridges: A:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Crystal Structure of drosophila Ago2 PAZ domain in complex with 3'-end 2'-O-methylated RNA. To be Published

Release Date

2011-05-25

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute-2