SMTL ID : 3mjg.1 (1 other biounit)

The structure of a platelet derived growth factor receptor complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG.1: 1 residues within 4Å: Chain C: N.13 1 PLIP interactions: 1 interactions with chain C Water bridges: C:S.16

13 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain C: N.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.57 NAG.3: 3 residues within 4Å: Chain C: P.27, H.70, N.71 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.71 NAG.4: 2 residues within 4Å: Chain C: N.183, D.270 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.183 NAG.5: 2 residues within 4Å: Chain C: N.198, H.245 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.198 Water bridges: C:N.198, C:N.198 NAG.6: 4 residues within 4Å: Chain C: E.214, N.260, Q.269, E.271 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.214, C:E.214, C:N.260, C:Q.269, C:E.271 NAG.7: 3 residues within 4Å: Chain C: T.256, A.273, N.275 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:T.256 Hydrogen bonds: C:T.256 NAG.8: 2 residues within 4Å: Chain D: N.13, S.16 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.13 Water bridges: D:S.16, D:T.17 NAG.9: 1 residues within 4Å: Chain D: N.57 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain D: H.70, N.71 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:H.70 NAG.11: 3 residues within 4Å: Chain D: I.182, N.183, D.270 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.183, D:D.270 NAG.12: 1 residues within 4Å: Chain D: N.198 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.245 Water bridges: D:N.198, D:N.198 NAG.13: 4 residues within 4Å: Chain D: E.214, N.260, T.262, Q.269 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.260 NAG.14: 2 residues within 4Å: Chain D: T.256, N.275 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:T.256 Hydrogen bonds: D:T.256, D:T.256 Water bridges: D:N.275, D:N.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shim, A.H. et al., Structures of a platelet-derived growth factor/propeptide complex and a platelet-derived growth factor/receptor complex. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-16

Peptides

Platelet-derived growth factor subunit B: AB
Beta-type platelet-derived growth factor receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
X

D
Y

Platelet-derived growth factor subunit B

Beta-type platelet-derived growth factor receptor

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