SMTL ID : 3mk3.1

Crystal structure of Lumazine synthase from Salmonella typhimurium LT2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.57 Å

Oligo State

homo-60-mer

Ligands

79 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.85, G.86, T.87, H.89 Chain E: R.128 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain A: R.128 Chain B: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain B: R.128 Chain C: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain B: Q.124, E.127, R.128 Chain C: G.86 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain C: R.128 Chain D: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain D: Q.124, E.127, R.128 Chain E: G.86 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain D: R.128 Chain E: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain F: G.85, G.86, T.87, H.89 Chain J: R.128 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain F: Q.124, E.127, R.128 Chain G: G.86 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain F: R.128 Chain G: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain G: R.128 Chain H: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain H: Q.124, E.127, R.128 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain H: R.128 Chain I: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain I: R.128 Chain J: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain K: G.85, T.87, H.89 Chain O: R.128 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain K: R.128 Chain L: G.85, G.86, T.87 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain L: Q.124, E.127, R.128 Chain M: G.86 Ligand excluded by PLIP SO4.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain L: R.128 Chain M: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain M: R.128 Chain N: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain M: Q.124, E.127, R.128 Chain N: G.86 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain N: R.128 Chain O: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain P: G.85, G.86, T.87, H.89 Chain T: R.128 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain P: R.128 Chain Q: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain Q: E.127, K.132, A.133 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain Q: R.128 Chain R: G.85, G.86, T.87 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain R: R.128 Chain S: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain S: R.128 Chain T: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain U: G.85, G.86, T.87, H.89, F.90 Chain Y: R.128 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain U: R.128 Chain V: G.85, G.86, T.87 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain V: R.128 Chain W: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.32: 6 residues within 4Å: Chain W: R.128 Chain X: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain X: R.128 Chain Y: G.85, T.87, H.89 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain 3: R.128 Chain Z: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain 0: G.86, T.87 Chain Z: Q.124, E.127, R.128 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain 0: G.85, G.86, T.87, H.89 Chain Z: R.128 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain 0: R.128 Chain 1: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain 0: Q.124, E.127, R.128 Chain 1: G.86 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain 1: R.128 Chain 2: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain 1: Q.124, E.127, R.128 Chain 2: G.86 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain 2: R.128 Chain 3: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain 4: G.85, G.86, T.87 Chain 8: R.128 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain 4: R.128 Chain 5: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.44: 6 residues within 4Å: Chain 5: R.128 Chain 6: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.45: 4 residues within 4Å: Chain 6: Q.124, E.127, R.128 Chain 7: G.86 Ligand excluded by PLIP SO4.46: 5 residues within 4Å: Chain 6: R.128 Chain 7: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.47: 5 residues within 4Å: Chain 7: R.128 Chain 8: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain 9: G.85, G.86, T.87, H.89 Chain d: R.128 Ligand excluded by PLIP SO4.49: 5 residues within 4Å: Chain 9: R.128 Chain a: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain a: R.128 Chain b: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain a: Q.124, E.127, R.128 Chain b: G.86 Ligand excluded by PLIP SO4.52: 6 residues within 4Å: Chain b: R.128 Chain c: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain c: Q.124, E.127, R.128 Chain d: G.86 Ligand excluded by PLIP SO4.54: 5 residues within 4Å: Chain c: R.128 Chain d: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.55: 6 residues within 4Å: Chain e: G.85, G.86, T.87, H.89, F.90 Chain i: R.128 Ligand excluded by PLIP SO4.56: 5 residues within 4Å: Chain e: R.128 Chain f: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.57: 4 residues within 4Å: Chain f: R.128 Chain g: G.85, G.86, T.87 Ligand excluded by PLIP SO4.58: 5 residues within 4Å: Chain g: R.128 Chain h: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain g: Q.124, E.127, R.128 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain h: R.128 Chain i: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.61: 6 residues within 4Å: Chain j: G.85, G.86, T.87, H.89, F.90 Chain n: R.128 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain j: Q.124, E.127, R.128 Chain k: G.86 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain j: R.128 Chain k: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.64: 5 residues within 4Å: Chain k: R.128 Chain l: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.65: 6 residues within 4Å: Chain l: R.128 Chain m: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.66: 6 residues within 4Å: Chain m: R.128 Chain n: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.67: 4 residues within 4Å: Chain j: G.86 Chain n: Q.124, E.127, R.128 Ligand excluded by PLIP SO4.68: 6 residues within 4Å: Chain o: G.85, G.86, T.87, H.89, F.90 Chain s: R.128 Ligand excluded by PLIP SO4.69: 5 residues within 4Å: Chain o: R.128 Chain p: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.70: 4 residues within 4Å: Chain o: Q.124, E.127, R.128 Chain p: G.86 Ligand excluded by PLIP SO4.71: 4 residues within 4Å: Chain p: Q.124, E.127, R.128 Chain q: G.86 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain p: R.128 Chain q: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.73: 5 residues within 4Å: Chain q: R.128 Chain r: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.74: 4 residues within 4Å: Chain r: R.128 Chain s: G.85, T.87, H.89 Ligand excluded by PLIP SO4.75: 3 residues within 4Å: Chain t: Q.124, E.127, R.128 Ligand excluded by PLIP SO4.76: 5 residues within 4Å: Chain t: R.128 Chain u: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain v: R.128 Chain w: G.85, G.86, T.87, H.89 Ligand excluded by PLIP SO4.78: 6 residues within 4Å: Chain w: R.128 Chain x: G.85, G.86, T.87, H.89, F.90 Ligand excluded by PLIP SO4.79: 4 residues within 4Å: Chain t: G.85, G.86, T.87 Chain x: R.128 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, P. et al., Crystal structure analysis of icosahedral lumazine synthase from Salmonella typhimurium, an antibacterial drug target. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-02-02

Peptides

6,7-dimethyl-8-ribityllumazine synthase: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
1

1
2

2
3

3
4

4
5

5
6

6
7

7
8

8
9

9
a

a
b

b
c

c
d

d
e

e
f

f
g

g
h

h
i

i
j

j
k

k
l

l
m

m
n

n
o

o
p

p
q

q
r

r
s

s
t

t
u

u
v

v
w

w
x

x
y

6,7-dimethyl-8-ribityllumazine synthase

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