SMTL ID : 3mks.2 (2 other biounits)

Crystal Structure of yeast Cdc4/Skp1 in complex with an allosteric inhibitor SCF-I2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain B: F.20, L.24, K.51, S.52, T.53, S.54 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.53, B:S.54 SO4.2: 2 residues within 4Å: Chain B: P.19, F.20 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.20 SO4.3: 4 residues within 4Å: Chain B: Q.129, E.131, R.359, N.440 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.440 Water bridges: B:R.359, B:R.359 Salt bridges: B:R.359 SO4.4: 5 residues within 4Å: Chain B: V.425, H.426, A.427, N.428, I.429 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.427, B:N.428, B:I.429 Salt bridges: B:H.426 SO4.5: 7 residues within 4Å: Chain B: L.102, W.105, S.402, N.404, I.405, F.441, G.443 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.402, B:G.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orlicky, S. et al., An allosteric inhibitor of substrate recognition by the SCF(Cdc4) ubiquitin ligase. Nat.Biotechnol. (2010)

Release Date

2010-07-21

Peptides

Suppressor of kinetochore protein 1: A
Cell division control protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Suppressor of kinetochore protein 1

Cell division control protein 4

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