SMTL ID : 3mlj.1

Reduced (Cu+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound carbon monooxide (CO)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.65, H.66, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.65, A:H.66, A:H.130 CU.2: 4 residues within 4Å: Chain A: H.200, H.202, M.272 Ligands: CMO.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.200, A:H.202, CMO.4

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.193 Ligands: CMO.5 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.193, H2O.2, H2O.2, H2O.6, CMO.5

2 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.4: 5 residues within 4Å: Chain A: H.200, H.202, G.266, M.272 Ligands: CU.2 No protein-ligand interaction detected (PLIP) CMO.5: 2 residues within 4Å: Chain A: H.193 Ligands: NI.3 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: L.68, R.198, H.200, Y.276 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.276, A:Y.276 Salt bridges: A:R.198, A:H.200

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: F.55, L.96, Y.97, T.106, L.108, A.196, F.232, M.278 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.96 Water bridges: A:A.98, A:T.106, A:T.106, A:T.106 GOL.8: 10 residues within 4Å: Chain A: G.71, N.94, L.96, F.114, R.115, V.116, G.121, S.122, S.288, F.289 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.94, A:S.122, A:S.122, A:A.160 Water bridges: A:R.115 GOL.9: 8 residues within 4Å: Chain A: Y.163, C.185, Q.186, Y.187, K.188, M.189, M.290, T.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.186, A:K.188, A:T.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chufan, E.E. et al., Differential reactivity between two copper sites in peptidylglycine alpha-hydroxylating monooxygenase. J.Am.Chem.Soc. (2010)

Release Date

2011-03-02

Peptides

Peptidyl-glycine alpha-amidating monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-glycine alpha-amidating monooxygenase

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