SMTL ID : 3mmu.12 (11 other biounits)

Crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: H.96, E.98 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.96, A:E.98, A:E.98, H2O.4, H2O.4 CD.2: 2 residues within 4Å: Chain A: E.99 Chain B: E.99 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:E.99, B:E.99, A:E.99, H2O.8, H2O.14 CD.3: 3 residues within 4Å: Chain A: E.136, H.196, E.253 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.136, A:E.253, H2O.4, H2O.4, H2O.4 CD.8: 2 residues within 4Å: Chain B: H.96, E.98 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.96, B:E.98, B:E.98, H2O.11, H2O.11 CD.9: 3 residues within 4Å: Chain B: E.136, H.196, E.253 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.136, B:E.253, H2O.11, H2O.12, H2O.12, H2O.14

8 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 2 residues within 4Å: Chain A: E.202, R.220 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.202, A:E.202 NI.5: 2 residues within 4Å: Chain A: D.226, H.230 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.226, A:H.230, H2O.5 NI.6: 1 residues within 4Å: Chain A: H.205 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.205, H2O.8 NI.7: 1 residues within 4Å: Chain A: E.127 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.127, H2O.4 NI.10: 2 residues within 4Å: Chain B: E.202, R.220 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.202, B:E.202, H2O.11, H2O.11 NI.11: 1 residues within 4Å: Chain B: E.127 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.127, H2O.14, H2O.14 NI.12: 1 residues within 4Å: Chain B: H.205 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.205, H2O.13 NI.13: 1 residues within 4Å: Chain B: M.69 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, J.H. et al., Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima. J.Struct.Biol. (2010)

Release Date

2010-07-28

Peptides

Endoglucanase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Endoglucanase

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