SMTL ID : 3mmz.1

CRYSTAL STRUCTURE OF putative HAD family hydrolase from Streptomyces avermitilis MA-4680

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-octamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.18, A:D.20, H2O.1, H2O.1, H2O.2 CA.2: 4 residues within 4Å: Chain A: G.136, A.138 Chain D: G.136, A.138 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:G.136, A:A.138, D:G.136, D:A.138, H2O.13 CA.4: 3 residues within 4Å: Chain B: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.18, B:D.20, H2O.5, H2O.5, H2O.7 CA.6: 4 residues within 4Å: Chain B: G.136, A.138 Chain C: G.136, A.138 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:G.136, C:A.138, B:G.136, B:A.138, H2O.5 CA.7: 3 residues within 4Å: Chain C: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.18, C:D.20, H2O.9, H2O.9, H2O.10 CA.9: 3 residues within 4Å: Chain D: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.18, D:D.20, H2O.6, H2O.14, H2O.15 CA.11: 3 residues within 4Å: Chain E: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.18, E:D.20, H2O.17, H2O.17, H2O.18 CA.12: 4 residues within 4Å: Chain E: G.136, A.138 Chain H: G.136, A.138 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain H, 1 Ligand-Water interactions Metal complexes: E:G.136, E:A.138, H:G.136, H:A.138, H2O.29 CA.14: 3 residues within 4Å: Chain F: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:D.18, F:D.20, H2O.21, H2O.21, H2O.23 CA.16: 4 residues within 4Å: Chain F: G.136, A.138 Chain G: G.136, A.138 5 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: G:G.136, G:A.138, F:G.136, F:A.138, H2O.21 CA.17: 3 residues within 4Å: Chain G: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:D.18, G:D.20, H2O.25, H2O.25, H2O.26 CA.19: 3 residues within 4Å: Chain H: D.18, D.20, N.110 5 PLIP interactions: 2 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:D.18, H:D.20, H2O.22, H2O.30, H2O.31

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.42, G.45, R.72 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: R.42, G.45, R.72 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: R.42, G.45, R.72, K.75 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain D: R.42, G.45, R.72 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain E: R.42, G.45, R.72 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain F: R.42, G.45, R.72 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain G: R.42, G.45, R.72, K.75 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain H: R.42, G.45, R.72 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daughtry, K.D. et al., Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry (2013)

Release Date

2010-04-28

Peptides

putative HAD family hydrolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

putative HAD family hydrolase