SMTL ID : 3mn8.1 (3 other biounits)

Structure of Drosophila melanogaster carboxypeptidase D isoform 1B short

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: R.82, S.126, G.129, Q.130, N.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.82

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.101, E.104, R.165, H.217 Ligands: GEM.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.101, A:E.104, A:E.104, A:H.217

1 x GEM: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID(Non-covalent)

GEM.3: 16 residues within 4Å: Chain A: H.101, E.104, R.165, N.174, R.175, H.217, G.218, D.228, G.279, A.280, W.282, Y.283, L.285, T.303, E.305 Ligands: ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.174, A:D.228, A:Y.283, A:Y.283 Salt bridges: A:H.101, A:H.101, A:R.165, A:R.165, A:R.175, A:H.217, A:D.228 pi-Cation interactions: A:Y.283

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: L.89, L.342, R.411 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.411, A:R.411 GOL.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.6: 1 residues within 4Å: Chain A: Q.330 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanco, S. et al., Structure-Function Analysis of the Short Splicing Variant Carboxypeptidase Encoded by Drosophila melanogaster silver. J.Mol.Biol. (2010)

Release Date

2010-07-28

Peptides

LP15968p: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LP15968p

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