SMTL ID : 3mor.1 (1 other biounit)

Crystal structure of Cathepsin B from Trypanosoma Brucei

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: G.126, A.130, Q.162, P.165, P.190, K.191, N.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.165

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: A.91, D.92, V.102, A.105, S.106, A.125, D.159, Y.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.92, A:S.106 GOL.3: 1 residues within 4Å: Chain A: L.256 No protein-ligand interaction detected (PLIP) GOL.5: 2 residues within 4Å: Chain A: F.75, D.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.76

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: Q.215, G.216, D.218, D.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.216, A:D.218, A:D.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koopmann, R. et al., In vivo protein crystallization opens new routes in structural biology. Nat.Methods (2012)

Release Date

2011-11-02

Peptides

Cathepsin B-like cysteine protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin B-like cysteine protease

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