SMTL ID : 3mp1.1

Complex structure of Sgf29 and trimethylated H3K4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN: H3K4me3 peptide(Non-covalent)

ALA-ARG-THR-M3L-GLN.1: 11 residues within 4Å: Chain A: I.408, D.426, E.428, Y.468, T.471, T.472, T.473, Y.475, D.493, G.494, E.495 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.408, A:Y.475 Hydrogen bonds: A:D.426, A:T.472, A:T.472, A:T.473, A:T.473, A:Y.475, A:Y.475 Water bridges: A:E.428 Salt bridges: A:E.428, A:E.495 pi-Cation interactions: A:Y.475

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.2: 15 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: Y.377, T.379 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.377 Hydrogen bonds: A:T.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bian, C. et al., Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation. Embo J. (2011)

Release Date

2011-05-04

Peptides

Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein,LINKER,SAGA-associated factor 29

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