SMTL ID : 3mp3.1 (2 other biounits)

Crystal Structure of Human Lyase in complex with inhibitor HG-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x 3HG: 3-HYDROXYPENTANEDIOIC ACID(Non-covalent)

3HG.1: 6 residues within 4Å: Chain A: R.14, D.15, Q.18, F.100, H.206 Ligands: MG.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.100 Hydrogen bonds: A:Q.18 Water bridges: A:S.48 Salt bridges: A:R.14, A:H.206, A:H.208

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.15, H.206, H.208, N.248 Ligands: 3HG.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.15, A:H.206, A:H.208 MG.4: 5 residues within 4Å: Chain B: D.15, H.206, H.208, N.248 Ligands: HGG.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.15, B:H.206, B:H.208, H2O.7

1 x HGG: (3R,5S,9R,21S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,21-tetrahydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphatricosan-23-oic acid 3,5-dioxide(Non-covalent)

HGG.3: 26 residues within 4Å: Chain B: R.14, D.15, Q.18, F.49, V.50, S.51, P.52, K.53, W.54, H.61, L.79, P.81, N.82, K.84, G.85, F.100, N.111, I.112, N.113, R.122, Y.140, S.142, T.178, H.206, H.208 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.50, B:Y.140 Hydrogen bonds: B:R.14, B:R.14, B:D.15, B:Q.18, B:N.82, B:N.82, B:K.84, B:K.84, B:G.85, B:N.111, B:N.111, B:R.122 Water bridges: B:S.51 Salt bridges: B:H.206, B:H.208 pi-Cation interactions: B:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, Z. et al., Functional insights into human HMG-CoA lyase from structures of Acyl-CoA-containing ternary complexes. J.Biol.Chem. (2010)

Release Date

2010-06-16

Peptides

Hydroxymethylglutaryl-CoA lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydroxymethylglutaryl-CoA lyase

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